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Detailed information on CNT30563605


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Actinidia chinensisOryza sativa33.410.1285.44158forward
CNT30523522Actinidia chinensisSetaria italica31.718.7984.67150forward
CNT30512612Actinidia chinensisJuglans regia26.646.2984.13126forward
CNT30730067Actinidia chinensisCorchorus capsularis50.9511.9278.42241forward
CNT30708948Actinidia chinensisGlycine max55.648.1784.03263forward
CNT30163033Actinidia chinensisPistacia vera20.087.0186.3295forward
CNT30634641Actinidia chinensisCapsicum annuum31.296.9182.43148forward
CNT30554955Actinidia chinensisOryza glaberrima33.416.1286.08158forward
CNT30251780Actinidia chinensisAvena sativa22.6219.3885.05107forward
CNT30453593Actinidia chinensisSaccharum spontaneum33.413.1184.81158forward
CNT30137714Actinidia chinensisLolium perenne24.526.3485.34116forward
CNT30228804Actinidia chinensisAnanas comosus40.591586.46192forward
CNT30476987Actinidia chinensisArabidopsis halleri23.2616.2284.55110forward
CNT30364944Actinidia chinensisSorghum bicolor22.629.388.79107forward
CNT30620999Actinidia chinensisCajanus cajan58.1418.1983.64275forward
CNT30595791Actinidia chinensisOryza meridionalis20.5113.7686.697forward
CNT30360669Actinidia chinensisLactuca sativa59.4122.8681.85281forward
CNT30371073Actinidia chinensisOryza glumipatula25.7912.4487.7122forward
CNT30326231Actinidia chinensisAsparagus officinalis25.798.1983.61122forward
CNT30103362Actinidia chinensisOryza rufipogon33.414.0985.44158forward
CNT30584710Actinidia chinensisEchinochloa crusgalli31.718.4185.33150forward
CNT30496207Actinidia chinensisDigitaria exilis20.934.4586.8799forward
CNT30117556Actinidia chinensisOryza nivara33.49.2786.08158forward
CNT30603672Actinidia chinensisOryza punctata22.627.3786.92107forward

Expression of CNT30563605

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MGHRRRPARPVAFRRHRRPRVRGRVRFFASRLFPWARVWQMAWSLASTAEWSGLYSPKSPPMWDPLWRRLGKLSRA*

Sequence

>CNT30563605
ATTAAGGACGCGTCCCACGCAGGATCCTCCTCCGTAAAGTCCGGAAACGCAAGATGGGACATCGGCGAAGACCCGCCCGACCCGTAGCTTTCCGACGTCA
CCGGCGACCCCGAGTTCGAGGTCGAGTGCGCTTCTTTGCGTCAAGGCTCTTTCCCTGGGCCAGGGTCTGGCAGATGGCGTGGAGTTTGGCGTCGACAGCG
GAGTGGAGCGGCTTGTACTCGCCGAAGTCGCCGCCGATGTGGGACCCGCTGTGGCGGAGGTTGGGGAAGTTGAGCCGCGCGTAGTCGCCTCGGAGCTTGT
ACGCCGCCTTGTCGTAGGCCAGCGCCGCCTCCTCGGCGGTGTCGAAGGTCCCGAGCCAGAGCCTGGTCCGGTTCTTGGGCAAACGGATCTCCGCGACCCA
CTTTCCCCAGTGCCTCTGCCTCACCCCTCTGTAAAGCTTCGTGGGCTTTGTGGGATAGCCCGCTTGCTTCATG