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Detailed information on CNT30150787


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Brachypodium distachyonOryza sativa21.865.1296.2580forward
CNT30520678Brachypodium distachyonSetaria italica25.9616.1392.6395forward
CNT30188045Brachypodium distachyonSecale cereale26.786.8792.8698forward
CNT30554955Brachypodium distachyonOryza glaberrima26.781091.8498forward
CNT30440289Brachypodium distachyonAegilops tauschii30.3321.9891.89111forward
CNT30251780Brachypodium distachyonAvena sativa24.8616.4994.5191forward
CNT30453593Brachypodium distachyonSaccharum spontaneum22.686.8996.3983forward
CNT30137714Brachypodium distachyonLolium perenne29.785.9693.58109forward
CNT30347505Brachypodium distachyonEragrostis tef25.9611.0691.5895forward
CNT30371073Brachypodium distachyonOryza glumipatula26.789.9991.8498forward
CNT30107802Brachypodium distachyonOryza longistaminata26.7811.7492.8698forward
CNT30103503Brachypodium distachyonOryza rufipogon21.867.4596.2580forward
CNT30584710Brachypodium distachyonEchinochloa crusgalli21.584.4396.279forward
CNT30496207Brachypodium distachyonDigitaria exilis25.964.2792.6395forward
CNT30117556Brachypodium distachyonOryza nivara21.864.6996.2580forward
CNT30604553Brachypodium distachyonOryza punctata26.786.5490.8298forward

Expression of CNT30150787

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MRRTGCQLVARSESQSISYEGYLVRANPAASSHGASLKSRGRGRRRCRGS*

>peptide 2 (30 aa)
TTNKDQKNTGANPPKAGAECLKCHLHRGDH*

Sequence

>CNT30150787
CACAACGAACAAGGATCAGAAGAATACGGGAGCTAATCCGCCAAAGGCCGGTGCAGAATGTCTAAAATGCCATCTGCATCGCGGCGACCATTAACACTAA
CCTAGATCCATGACAACGCTAAAGACGGGGTACTAGTACTAGTAGTAGCTTAGCAGAGACCGAGATGAGACGAACTGGGTGTCAGTTGGTGGCGAGGAGC
GAGTCCCAGTCGATCTCGTACGAGGGGTACTTGGTGAGGGCGAATCCTGCGGCCTCGTCCCATGGCGCCTCGCTGAAGTCGAGGGGCCGCGGGAGGCGGC
GTTGTCGGGGAAGTTGAGCCGCGCGGCGTCCCCGCGGAGGCGGTACGCGGCCTGGTCGTAGGCGAG