CANTATAdb - search

Detailed information on CNT30364751

BLAST search results

BLAST vs Swiss-Prot:
sp|O65665|ERF60_ARATH, E-value = 1e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30520678	Sorghum bicolor	Setaria italica	10.35	25.3	90.6	149	forward
CNT30552772	Sorghum bicolor	Oryza glaberrima	16.18	23.56	92.7	233	forward
CNT30251780	Sorghum bicolor	Avena sativa	10.07	26.27	89.66	145	forward
CNT308584	Sorghum bicolor	Zea mays	3.61	25.87	96.15	52	forward
CNT30595791	Sorghum bicolor	Oryza meridionalis	11.94	24.4	94.77	172	forward

Expression of CNT30364751

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MSIAAAMRTTRCRKLSLAGARRRDKRSFFVMQNQNRKKFGNQTCSSIKVEKRGGCLCKEKGVVS*

>peptide 2 (37 aa)
MTFSTGRAVRKNNRQLNQEISTYLLLHHNTGRRCTSY*

>peptide 3 (54 aa)
MESQSISQDGDWQMAVSLASTEAWSGPARCAPSRRRAGKLRRAMSPRRRKAALS*

>peptide 4 (61 aa)
MQRKRGGELTRVLQNNPFDRRPNKSRQESRREKRFSGSLFPLARRGVMKLRKNPNPRTRFF*

Sequence

>CNT30364751
GAGGAATTACTTAAGAAGCAACTGATAGATCATAACACTTAATAACACAGGATTACAATGACTTTCTCGACTGGCCGTGCCGTGAGAAAAAACAACCGGC
AGCTCAACCAGGAGATTAGCACATACTTACTGCTGCATCACAACACTGGACGACGATGTACTAGCTACTAGTTTACTCACTGCTACTCGCAGCCGCCATG
GCCGATGTCTAAAATGCCATCGAGCCACCGCCGCTGCAAACCCCAAATCGAAAATTACACAGAGCTATCATTGAGCTGACACTGACTGAATCTTGCTGCT
GCTACTACTATAGCAGTTGTAGTTGATCGTTCACGAGAGGATGGAATCCCAGTCGATCTCCCAGGACGGGGACTGGCAGATGGCGGTGAGCTTGGCGTCC
ACGGAGGCGTGGAGCGGGCCGGCGAGGTGCGCGCCGTCGCGGCGGAGGGCCGGGAAGTTGAGGCGCGCCATGTCGCCGCGGAGGCGGAAGGCGGCCTTGT
CGTAGGCGAGCGCCGCGTCCTCGGCGGTGTCGAAGGTGCCGAGCCACAGCCGGGTGCGGTTCTTGGGGAGGCGGATCTCTGCCACCCACTTGCCCCAGTG
GCGCTGGCGGACGCCGCGGTACAGCTTCGACTGCGCCGGCGCCAGCGGCGGCGATCCGGACTGCTTCATCGGCTGCGCCCGCGGGCCCAGGAACGCCGCG
TGCAGACCCCTCTGCTGCTGCTGCTGCTGCTGGAACATGAACTGGGCCTGGATCTGCTGGATCTGGGCCGGGCCGAGCTGGTTCAGGCCCATCTGCCCAA
CCATGCTCGGCGCCGCGTAAGGCGACGAGTAGAGTGGCGGAAGCTGCGAGAAAGGCGAGGAGGAGGAGGAGGAAGCACTCGTTATAAAAGGCTCGAGTGC
TTTCGCGAGCTCCTCATCCGAGGGGGAGGAGGAGGCGATCTGGTGTGCGTTGTAGTACTTGTACATGTCGATAGCTGCGGCCATGAGGACTACTAGATGC
AGAAAGCTAAGCTTGGCTGGAGCTAGAAGAAGAGATAAAAGGAGCTTTTTTGTTATGCAAAATCAAAATAGGAAAAAGTTTGGAAATCAGACCTGTTCCT
CAATAAAAGTAGAGAAACGAGGTGGGTGTTTATGCAAAGAAAAAGGGGTGGTGAGCTGACAAGGGTATTGCAAAACAACCCTTTCGATCGAAGGCCAAAC
AAAAGTCGGCAAGAATCCAGAAGAGAAAAAAGGTTCTCTGGATCTCTGTTCCCCCTAGCTAGGAGAGGTGTGATGAAGTTGAGAAAAAATCCTAACCCAA
GAACACGCTTCTTTTGAGGATTCTAATAAACCCAAAAGAAGAGAGCCTCTTGAACCGGACCTTTCTTTGTGCTGTGCGTCCCTGCTGCTAAAAGAAGAAT
CAGAGAGTTCAGAGAACAAACCTGCGCTGCGTTGCTGATG