CANTATAdb - search

Detailed information on CNT30512612

BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 7e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30379825	Juglans regia	Manihot esculenta	9.49	31.99	81.58	190	forward
CNT30708948	Juglans regia	Glycine max	8.29	30.4	81.33	166	forward
CNT30563605	Juglans regia	Actinidia chinensis	6.29	26.64	84.13	126	forward
CNT30251780	Juglans regia	Avena sativa	5.59	20.29	83.93	112	forward

Expression of CNT30512612

Peptides detected in this lncRNA

>peptide 1 (44 aa)
SRYYKQDRNLKLSVAMSGKKNYQHGQDKTEKPENTTREHKHLTH*

>peptide 2 (40 aa)
MTGFTSGTKQGSSVFTCFCEFTKFWQIACNFASTEEWRGL*

>peptide 3 (70 aa)
MSSLVLKMWEIESGKLSPELIGGLVVSQSRLFGCIEGAEPETGSVLGESDLRDPLAPVSLSNTSVEFSWF*

>peptide 4 (46 aa)
MGIVLGLRKSRACVFCCCQWLSLWFWSEAEAMAAICCCRCCCCCWS*

Sequence

>CNT30512612
AAGTAGATATTACAAACAGGACAGAAACTTGAAACTCTCCGTGGCCATGTCAGGAAAAAAAAATTACCAGCATGGCCAAGACAAGACGGAGAAACCTGAA
AATACAACTAGAGAACATAAACATCTGACCCACTAATCCCTTTTATTGACTGACTCCTACTTAAACCAAGCAACTCCTCTGCAACAGTCAAAAATTTCAT
TGCAGAAGCTGCTGAAGACCCGAAGCTAAACCTAAAATTACATATACTTCCAGAGGGAAAAAAAAAAATAGTCACATATTCATCACCAAGACTTAGATAG
CTGCCCAGTCGATCTCCACTGAAGGAAACTTCTCCAAAGGGAAATTCTCAGTCTCATCCTGCGAGTCTGAGAAATCTAAGAATGTAATATCAGATTCTGG
GGAAGAAGATCCAACGAATGACGATGATTCATCGGACAAAGCCGGCGACAACGACGAATTCTCCACCTTAAACTCCTCCGATCCGAAAACTCCGTGTTCT
CTCCTTAACTCGGTTCTCTGTGATTCATCAAAGACCGAGCTTTCACCCAAAGCAGCTGAAATGACTGGCTTTACATCGGGAACAAAACAAGGCTCCTCTG
TTTTCACCTGTTTCTGCGAATTTACCAAGTTCTGGCAAATTGCTTGTAACTTCGCATCCACTGAGGAATGGAGGGGCTTGTAGTCACCGAATTCGCCTGA
GATATGAGCTCCTTGGTGCTTAAGATGTGGGAAATTGAGTCTGGCAAACTCTCCCCTGAGCTTATAGGCGGCCTTGTCGTAAGCCAAAGCCGCCTCTTCG
GCTGTATCGAAGGTGCCGAGCCAGAGACGGGTTCTGTTCTTGGGGAGTCTGATCTCCGCGACCCACTTGCCCCAGTGTCTCTGTCTAACACCTCGGTAGA
GTTTAGCTGGTTTTGAAGGAGTGCCAACATGTTTCATGGGAATAGTCTTGGGGCTGAGGAAGTCAAGAGCGTGTGTGTTTTGTTGCTGCCAATGGCTTAG
CCTCTGGTTTTGGAGTGAAGCTGAAGCCATGGCAGCGATTTGTTGCTGTCGCTGTTGCTGTTGCTGCTGGAGTTGAATTTGGGCTTGAATTTGAAGAATC
TGAGAGGGGGTGAGAAGGGAAGATTGTAGAGAAAGAATAAGAAGGGTAAGATGCGAAAGAAAGAGAAGAAGACGGAGAAGAAGTAGATGGAGAGGGAGGA
GAAGAAGTGGTTATAGAAGAGGTTGATGAAGCACTTTTCATAAAAGGTACCAGTGCTTTCATTAGCTCTTCTCCTAAAGGATCTGAGAAAAATGATGTGG
AGCTGCTATTGTAAATATCCATAGCTGCTGCCATCCCTTCTCAAGAACGTACAAGCGAAAACCACACCACTAAAATTCTAAGAAAAATAAGGGCTTCTTC
AAAATTAACCTGTTTTCTTTCCAAAACTGAAGAACAGGAAACTTTTTATAGAAGCAAGAAAAACTGCGTACAGAAATAAAGCTCAAAAGAGGCTTATATA
AACGACCTCTAGACTACCAGATCTTAACAAAAACCAACCAGAGGGACAGAAAAACAAACCCTCTTAGTTGATAAGAGAAAAACTAAAACTTTTTATCGAA
GTAAAACAGAAGAAAATCTGGATCTCTATTCTGAATCACCTGGCTTTCAAAAACACCCTTCTGGGTCTGCTTTTCTGTTTTCACAAAAATGTCTCTTTGT
TTCAGTTAAAACCAAGAAAACAAACCTCCCAAAACACTGCTTGAAAGACAGACGATGACAGAACGGGATTCAGAGAAACCGGGGATATAAGAGAGGGGGA
GGGGGAAATGAAAAGCAAGAAGATTATCAAACGCAATTGCAGAAGCTAGGCAGCTAAAGGAAAGGAGAGGGGAGAAAGCGTTCTCTATCTATCACACTTT
GTTTTGTGTCCTCACTTTACACTCTTGCGTTTAAGAGTCATCTCCTCTCTGCCTTATATAACCCTCCAGCCCACGGCTTTGTGTCTGCAAAACCTCTGAA
TTC