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Detailed information on CNT30696108


BLAST search results

BLAST vs Swiss-Prot:
sp|O65665|ERF60_ARATH, E-value = 1e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520536Oryza sativaSetaria italica30.8865.9486.51482forward
CNT30708948Oryza sativaGlycine max7.2420.782.3113forward
CNT30563605Oryza sativaActinidia chinensis9.5531.585.23149forward
CNT30554882Oryza sativaOryza glaberrima4670.2596.38718forward
CNT30440289Oryza sativaAegilops tauschii1340.287.19203forward
CNT30251780Oryza sativaAvena sativa13.3937.8686.6209forward
CNT30450155Oryza sativaSaccharum spontaneum34.2125.3687.45534forward
CNT30347505Oryza sativaEragrostis tef16.4629.9286.38257forward
CNT30368632Oryza sativaSorghum bicolor5.5724.2386.2187forward
CNT30371073Oryza sativaOryza glumipatula34.5955.0598.7540forward
CNT30107802Oryza sativaOryza longistaminata37.3569.8291.94583forward
CNT30150787Oryza sativaBrachypodium distachyon5.1221.8696.2580forward
CNT30103362Oryza sativaOryza rufipogon4664.0597.08718forward
CNT30577660Oryza sativaOryza barthii25.5684.1898.5399forward
CNT30580794Oryza sativaEchinochloa crusgalli30.8828.6987.14482forward
CNT30496207Oryza sativaDigitaria exilis34.0223.8885.69531forward
CNT30117556Oryza sativaOryza nivara44.3940.6799.71693forward
CNT30604553Oryza sativaOryza punctata29.430.6490.63459forward

Expression of CNT30696108

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MFWQSVWSLASTEAWSGPREAALSGKLSRAASPRRRYAAWS*

>peptide 2 (51 aa)
RKQVRREIDLRTQTNQTKRIRDYKTANPCPSVRCRMSKIPSARRRRRRRLG*

>peptide 3 (49 aa)
GNKSGERSIYVHKRTKPKGLGTIKLLIHARPCGAECLKSHLHGGGGGDD*

>peptide 4 (45 aa)
MLRRRRRRQRTSWRSWRRRCSGRASGAWRRRRRGAGRGRRRCRGS*

Sequence

>CNT30696108
GAGGAAACAAGTCCGGAGAGAGATCGATCTACGTACACAAACGAACCAAACCAAAAGGATTAGGGACTATAAAACTGCTAATCCATGCCCGTCCGTGCGG
TGCAGAATGTCTAAAATCCCATCTGCACGGCGGCGGCGGCGGCGACGATTAGGCTAACGACGGCGTGAGTACTAGCCAAGAAGTGGTGGTGGTGTTAATT
GGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTAGGACGGGTACTTGGTGAGGGCGAAGGCGGCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCGAGCTGC
TGCATCTCCGGCACGGTCGCCGGCGTCTCGGCCGTGGTGGCGGCGGAGGACGGCGACAGGGAGGGCGACGAGTCGGCGGACTCCAGGCAGGACGACGCGT
CGTCGGAGGACGGCGACGAGCAGTTGCTGGTGGGCGCGGAGGATGTTGCGGCGGCGGAGGCGGAGACAGAGGACTTCTTGGCGTTCTTGGCGGCGGCGAT
GTTCTGGCAGAGCGTCTGGAGCTTGGCGTCGACGGAGGCGTGGAGCGGGCCGCGGGAGGCGGCGTTGTCGGGGAAGTTGAGCCGCGCCGCGTCGCCGCGG
AGGCGGTACGCCGCCTGGTCGTAGGCAAGCGCCGCCTCCTCGGCTGTGTCGAAGGTGCCGAGCCAGAGCCGCGTGCGGTTCCGCGGGAGGCGGATCTCCG
CCACCCACTTCCCCCAGTGCCGCTGCCGCACGCCGCGGTACAGCTTCTGCGGCCGCGGCGGCGTCGCCGCCGCCCCCGCCGCCGAAGCCGACGACGACGA
CGCCTTCATCGGCTGCGCGCGCGGGCCGAGCGGGCCGGCCTGCGCCGCCTGCCGCTGGAGGTGGAGGCGGGCCTGGATGTAGTGCATCTGGGCCGGGCTG
AGCTCTGGCTGCTGGGCCAGCCCGCCACCGTACGCGAACGCGTGCGGGAAGGAGAATGGCGAGGTGGGACTAAACTGGGAACAAACCGGAGGCGAGCCGG
AGGCATCTCGGATAAAAGGCTCGAGTGCTCTCATCAGCTCCTCCCCTGACAGATCTATAGCTGCAGCCATCTACTCACTCTTTTTTTTGGGATTTTTTTT
TCTGATACTAAAACAGTAGTAACAAAGATTTGCCTGGTTCCGAATCCAAAATCAAGAACAGGCAGGAAGGAGGGAGAAATCGACAGCCACAGTAAAAAAA
CAGATGGCTTTTTGGTGGTAGATCTAGCAAGTGAGGTGTGGAAAAAGAACCCCTCTTGGCTACCAACCTAACACTAGAACACAAAGAAGATGAAAGAAAA
ACAGCAGATCTGGGAGCCCTGGATCTAAAAGGCCCTGGGTCTCTCGCTCTCTGCAAGCAACCTAACCAAGAAACCGTAGAAGAACAGGTGGGGGAGCCAG
AGGAGGAAGAAGAAGAAGAGGGTTTCGAGAAAACTTTACCTTGAAGACGCTCGAAGTCGCTCAGATCTAAAGCTTTTCTTACCTCGCTCGAGCTCACGGT
GGCTGTGGGTGTTCGATGGCTGTGGATCTGGGTGTGTGTGTGGGCGAAAGTGGGAATGGTG