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Detailed information on CNT30228634


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LM15|RA213_ARATH, E-value = 3e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520678Ananas comosusSetaria italica15.5925.391.28149forward
CNT30702960Ananas comosusQuercus lobata10.8824.5384.62104forward
CNT30251780Ananas comosusAvena sativa14.442589.13138forward
CNT30100483Ananas comosusOryza rufipogon20.7117.3194.44198forward

Expression of CNT30228634

Peptides detected in this lncRNA

>peptide 1 (34 aa)
YINTIKVLKSNIIITQLHNNYNYTIDLKHLLTRW*

>peptide 2 (93 aa)
MAWSLASTEARSGAGEVAAEAERGLVVGERGLLGGVEGAEPEPRPVLREPDLRHPLPPVPLPHPAVQLRRLPPRRRRRRGSPVLHGLRPRAEVA

Sequence

>CNT30228634
TACATAAACACCATAAAAGTACTTAAAAGCAATATAATAATTACACAGCTACACAACAATTACAACTACACAATAGATTTAAAACATCTCCTTACTCGCT
GGTGATGCTGAGGCAAAAACATCCAGCAAAAACCAGGAGGAGGTGACCCCAATATAATAATTAATTACATACCAAGCCCACTATTAAGAAAGGGGGGAAA
AAAAAAAAAAAAACCTAAAAGAGGACTCTGATTCTTCTTCTTCGACCTAAAAGAGCTCTCCGCAAACGTCTAAAACCCCATTTGCAGAAGAAGCCCATAA
CCACTAATTAAGAACTACACCATACTACTACACCAAATACAATTATATTCCCACAAGACGAAGAAAAAAAAAAGAAAAAAAATATACTAATTTTGGGATA
AAATGGAGTCCCAGTCGATCTCGTAGGAGGGATACTTGCGGAGGAAGAAGCTCTCGGACTCGTCCCATGGCGCCTCGGTGAAGTCCAAGGTCTCCATCTC
CGACACCGGCGACGACGAGTCCTCGGCCTCCCCGTCCGACGACGACGAGCTCTCCTCCGCCGCCGCCGAGGCCGGGGCGGAGGAGCTCGGCGGAGCTGCT
GCGGCGGCGGCTGCGCTCCGGCCGGTCTTGGGGGCGGGGGCGGAGGAGGAGGTGGAGGCGAGGGTTTGGCAAATGGCCTGGAGCTTGGCGTCGACGGAGG
CGAGGAGCGGGGCGGGCGAAGTCGCCGCGGAGGCGGAACGCGGCCTTGTCGTAGGCGAGCGCGGCCTCCTCGGCGGTGTCGAAGGTGCCGAGCCAGAGCC
GCGTCCGGTTCTTCGGGAGCCGGATCTCCGCCACCCACTTCCCCCAGTGCCGCTGCCGCACCCCGCGGTACAGCTTCGTCGCCTTCCCCCCCGGCGCCGC
CGCCGCCGCGGCAGCCCCGTGCTTCATGGACTGCGCCCGCGGGCCGAGGTAGCCAG