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Detailed information on CNT30453593


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LM15|RA213_ARATH, E-value = 2e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520507Saccharum spontaneumSetaria italica32.734.6594.92394forward
CNT30708948Saccharum spontaneumGlycine max9.6321.2582.76116forward
CNT30563605Saccharum spontaneumActinidia chinensis13.1133.484.81158forward
CNT30251780Saccharum spontaneumAvena sativa16.8536.7892.12203forward
CNT30228530Saccharum spontaneumAnanas comosus15.0222.1391.16181forward
CNT30150787Saccharum spontaneumBrachypodium distachyon6.8922.6896.3983forward

Expression of CNT30453593

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGWARGPSTEDCGDWRCRWRRAWMYCIWAGLSWPAPSAAAANGYPP*

>peptide 2 (57 aa)
MRGSSELYLRRARTRSDLSLPRSNSLETVAGGRWIGGGFGCGRGAGERMRWLVGVLVG

>peptide 3 (41 aa)
MFWQSVWSLASTEAWSGPREAALSGKLRRAASPRRRYAAWS*

Sequence

>CNT30453593
TCGGTTGTGGTTCTCTCCTCCGGGAACCCAACCCTAAATAACATAAGAGATCTACAACTGACTGACCGGTGACAGCAACAAAAACGAATTGAACATCTAC
ACAAAACGAACGAACGGGATTAGCACTAATAATCCACTAGTGCCCGCGCAGGATGTCTAAAATCCCATCTGCGCGACGGCCGTTAACCTTAACCCTCTGC
TGCAGCCTGCAGTAGTCGTCGGAAGGAGCCAAGAAGAACAACAATGTCGGTCGGTGGTTAATTGGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTACGAC
GGGTACTTGGTGAGCGCGAAGCCGGCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCCAGCTGCTGCATCTCCGGCACCGTCGACGACTCGGGGGAGGCGG
ACGGCGACGGGGACGGGCACGAGGACTCGGCGGCGGACTCGAGGCAGGACGAGGACGCGTCGTCGGAGGACGGCGAGGAGGAGCAGTTGCTGGCGGAGGC
GGAGGTGGGCTTCTTGGCGCCCTTCTTGGACGCGGCGATGTTCTGGCAGAGCGTCTGGAGCTTGGCGTCGACGGAGGCGTGGAGCGGGCCGCGGGAGGCG
GCGTTGTCGGGGAAGTTGAGGCGCGCCGCGTCGCCGCGGAGGCGGTACGCGGCCTGGTCGTAGGCGAGCGCCGCCTCCTCGGCGGTGTCGAAGGTGCCGA
GCCAGAGGCGGGTGCGGTTCCGCGGGAGGCGGATCTCCGCTACCCACTTGCCCCAGTGCCGCTGCCGCACGCCGCGGTACAGCTTCTGCGGCCGCGGCGG
GGTCGGGGCCGCCGCCGCGGACGCCTTCATGGGCTGGGCCCGCGGGCCCAGCACGGAGGACTGCGGCGACTGGCGCTGCAGGTGGAGGCGGGCCTGGATG
TACTGCATCTGGGCTGGGCTCAGCTGGCCCGCCCCCTCGGCCGCGGCGGCGAACGGGTACCCGCCGTAGGCGGCTGCGGCGGCGACTTGGTGGAAGGAGA
ACGGCGACGAGGGACTGAGAGGCTGGAGGGGATGAGAGGGTCGAGTGAACTTTACCTGCGACGCGCGAGAACTCGCTCAGATCTAAGCTTACCTCGCTCA
AACTCACTGGAAACCGTGGCGGGTGGGCGCTGGATCGGAGGCGGATTTGGCTGTGGACGGGGTGCGGGTGAGCGGATGCGATGGCTGGTGGGAGTGTTGG
TGGGG