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Detailed information on CNT30496207


BLAST search results

BLAST vs Swiss-Prot:
sp|O65665|ERF60_ARATH, E-value = 7e-32

BLAST vs NONCODE:
NONBNAT000030, E-value = 2e-06

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Digitaria exilisOryza sativa25.8136.7786.24574forward
CNT30672261Digitaria exilisSetaria viridis10.2543.7689.47228forward
CNT30520536Digitaria exilisSetaria italica22.6268.8194.83503forward
CNT30563605Digitaria exilisActinidia chinensis4.4520.9386.8799forward
CNT30554882Digitaria exilisOryza glaberrima25.1854.7982.68560forward
CNT30440289Digitaria exilisAegilops tauschii5.0822.3892.92113forward
CNT30251780Digitaria exilisAvena sativa7.3729.7194.51164forward
CNT30450155Digitaria exilisSaccharum spontaneum41.8244.1690.11930forward
CNT30228530Digitaria exilisAnanas comosus8.1422.1388.4181forward
CNT30347505Digitaria exilisEragrostis tef10.9728.4188.93244forward
CNT30362823Digitaria exilisSorghum bicolor12.6854.3483.69282forward
CNT30150787Digitaria exilisBrachypodium distachyon4.2725.9692.6395forward
CNT30103362Digitaria exilisOryza rufipogon25.8151.282.58574forward
CNT30580794Digitaria exilisEchinochloa crusgalli41.9155.4890.99932forward
CNT30117581Digitaria exilisOryza nivara16.3722.9582.14364forward

Expression of CNT30496207

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MFWQSCWSLASTEAWSGPREAALSGKLRRAASPRRR*

>peptide 2 (35 aa)
MNMIAVYFRGNLQQLWLSGTNTSRNTCNISLIDGR*

>peptide 3 (33 aa)
MALVADLHTNLLAQGRCGKRTSLGYQTTSKLDC*

>peptide 4 (29 aa)
MRRCSGRAAGAWRRRRRGAGRGRRRCRGS*

>peptide 5 (87 aa)
MKPRRTRDREEEEGEERTLPASRENSLRSKLTSLELTGICGGWALDGRRIWLWTSGREMVVVAWECSVGREEERRCKELLYSQPASLA

>peptide 6 (46 aa)
MGWARGPRTEDCVWCCRWRRAWMYWIWAGLSWPAPSALAAASGYPP*

>peptide 7 (41 aa)
MGGGFGCGRVGGRWWWWLGSVRWGGRRKGGARSSFIASRPRW

>peptide 8 (36 aa)
WSWPADDSPLVHYESLCFSCKAVGYMIRNISVLYKH*

Sequence

>CNT30496207
TGGTCATGGCCAGCTGATGATTCACCTTTGGTTCACTATGAATCACTTTGTTTCAGCTGCAAAGCTGTTGGATACATGATACGCAACATCAGCGTATTGT
ACAAGCATTGAAAACGAGTTCCAGTTCATGTGTTGGATACATGATAGTACGCAACATCAGCGTATTGTACAAGCATTGAAAAGGAGTTTCAGTTCATGAA
CATGATTGCTGTTTATTTCAGAGGCAACCTTCAACAATTGTGGCTTTCTGGCACCAATACTTCCAGGAATACATGCAATATATCCTTGATCGATGGTAGA
TAAGCATAACACATATTTTTACAACAAAACAATATAGCACTAACAATAGTAGTTCATCAGATTACATGTCCTCGACACAGCTAGCTGATTTTACATACTC
GATAATATCATATCACTGATGTTCTTACAACCTGTAGAACAGCAGGAGCAACACCACCTACCAAGAAACAAGAGCTAGAACAATGGACACTTGACCGGCC
GGAGCCACTGACCAGTGACCTACCGAACACCGGGAGACGCCGGACACAAAAACGCCGGCCTCCCATCGGTTGGTTCTCCCCTCCGGGAACCAAACCCTAA
CAGAGATCTACAACTTACTTGACATCAACACCAAAAACGAATTCTGAAACATCTACACAAAACGAACGGGATTAGAGCTAATAATCCACTAGGTGCCCGC
GCAAGATGTCAAAAATCCCATCTGCGCGACGGCCGTTAAAGCCTCTCTGCTTGTAGTAGTAGGAGCGCCAAGAAGAAATGGCAGGTGGTTAATTGGTGGC
GAGGAGGGAGTCCCAGTCGATCTCGTACGACGGGTACTTGGTGAGGGCGAGGCCGGCGACCTCGTCCCACGGCGCCTCGCTGAAGTCCAGCTGCTGCATC
TCCGGCACCGTCGACTCGGGGGAGGCGGACGGCGACGGGGACGAGGACTCGGCGGCGGACTCGAGGTAGGACGAGGACGCGTCGTCGGAGGTCGGCGAGG
AGCAGTTGCTGGTGGGGGCGGACGAGGACGTGGCGGCAGCTGCGGACTTCTTGGCGCCCTTCTTGGATGCGGCGATGTTCTGGCAGAGCTGCTGGAGCTT
GGCGTCGACGGAGGCGTGGAGCGGGCCGCGGGAGGCGGCGTTGTCGGGGAAGTTGAGGCGCGCCGCGTCGCCGCGGAGGCGGTAGGCGGCCTGGTCGTAG
GCGAGCGCCGCCTCCTCGGCGGTGTCGAAGGTGCCGAGCCAGAGGCGGGTGCGGTTGCGCGGGAGGCGGATCTCGGCAACCCACTTGCCCCAGTGACGCT
GCCGCACGCCGCGGTAGAGCTTCTGCGGGCGCGGCGGGGTGGGGGCAGCAGCCGCCGCAGACGAGACCTTCATGGGCTGGGCCCGCGGGCCAAGGACGGA
GGACTGCGTCTGGTGCTGCAGGTGGAGGCGGGCCTGGATGTACTGGATCTGGGCCGGGCTCAGCTGGCCCGCCCCCTCGGCACTGGCGGCGGCGTCCGGG
TACCCACCGTAGGCGGCGGCGTGGTGGAAGGAGAACGGCGAGGTGGGACTGAGAGGTTGGTGGTGGTGTTGGAGAAGCGGACTGGATCCGTGAGGAGCAG
AGGCATCACGGATAAAAGGCTCGAGTGCTCTCATCAGCTCCTCTCCGGACAGATCTATAGCGGCAGCCATCTAGACTATCTTAGACCTGAAAGACTCTTT
TTTTTTGTTTTTTTTTTCTCAAGCAAACCAAGAACAAAAGAAGCAGAACCCAACAGCCACAGTAAAAAACAGATGGCTCTGGTGGCAGATCTGCACACGA
ACTTACTTGCACAAGGGAGGTGTGGAAAAAGAACCTCTCTTGGCTACCAGACTACTAGCAAACTAGACTGCTAAAGACCAAAACCGAAGAAGAAATAGCA
GATCTGAAGCCCAGGATCTAAAAGGCCCCGGGTCTGTCGCTGTCTGCTCGAGGAAGAAGAATGAAACCAAGAAGAACAAGAGACAGAGAGGAGGAAGAGG
GTGAAGAGAGAACTTTACCTGCGTCGCGCGAGAACTCGCTCAGATCTAAGCTTACCTCGCTCGAACTCACTGGAATCTGTGGTGGGTGGGCGCTGGATGG
GAGGCGGATTTGGCTGTGGACGAGTGGGAGGGAGATGGTGGTGGTGGCTTGGGAGTGTTCGGTGGGGCGGGAGGAGGAAAGGAGGTGCAAGGAGCTCCTT
TATAGCCAGCCGGCCTCGCTGGCC