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Detailed information on CNT30371073


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Oryza glumipatulaOryza sativa55.0534.5998.7540forward
CNT30520678Oryza glumipatulaSetaria italica52.587.4482.33515forward
CNT30708948Oryza glumipatulaGlycine max11.8221.2583.62116forward
CNT30563605Oryza glumipatulaActinidia chinensis12.4425.7987.7122forward
CNT30554858Oryza glumipatulaOryza glaberrima91.6488.4896.89899forward
CNT30440289Oryza glumipatulaAegilops tauschii29.4657.2383.04289forward
CNT30251780Oryza glumipatulaAvena sativa34.6661.5982.65340forward
CNT30368632Oryza glumipatulaSorghum bicolor8.8724.2386.2187forward
CNT30107802Oryza glumipatulaOryza longistaminata83.8998.5691.86823forward
CNT30150787Oryza glumipatulaBrachypodium distachyon9.9926.7891.8498forward
CNT30103362Oryza glumipatulaOryza rufipogon85.8375.1198.81842forward
CNT30117581Oryza glumipatulaOryza nivara85.2252.7198.92836forward
CNT30604553Oryza glumipatulaOryza punctata82.2653.8786.37807forward

Expression of CNT30371073

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MFWQSVWSLASTEAVRRLVVGKRRLLGGVEGAEPEPRAVPREADLRHPLPPVPLPHAAVQ

>peptide 2 (49 aa)
MATSSCWWARRMLRRRSRRQRTSWRSWRRRCSGRASGAWRRRRRYAAWS*

Sequence

>CNT30371073
AACAACGACGCTAAATAATAATAATAGTAGTAGTAGAGGTAATTCACATTACAAGTTCTTATAACACGCTAATAATATTACAAGACATAATAATAATAAT
AATGCTACTACTACTGTTTACAACCTGTAAGATCAGCAGTAGAAGGTAATAACAGACTTTAGAAGAGCAATGGACGCCACGGCCGGAGTAACTGACCAGT
GACCGGCCACCGGAGACGCACGCCGGACACAAAAACGCCGGCTGCCGGTAGCATCGGCGTCTCCGGTTGAGGAAGAACACCAACCAACCCTAGCATCTAC
AGAGGAAACAAGTCCGGAGAGAGATCGATCTACGTACACAAACGAACCAAACCAAAAGGATTAGGGACTTAAAAACTGCTAATCCATGCCCGTCCGTGCG
GTGCAGAATGTCTAAAATCCCATCTGCACGGCGGCGGCGGCGGCGGCGATTAGGCTAACGACGGCGTGAGTACTAGCCAAGAAGTGGTGGTGGTGTTAAT
TGGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTAGGACGGGTACTTGGTGAGGGCGAAGGCGGCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCGAGCTG
CTGCATCTCCGGCACGGTCGCCGGCGTCTCGGCCGTGGTGGCGGCGGAGGACGGCGACAGGGAGGGCGACGAGTCTGCGGACTCCAGGCAGGACGACGCG
TCGTCCGAGGATGGCGACGAGCAGTTGCTGGTGGGCGCGGAGGATGTTGCGGCGGCGGAGTCGGAGACAGAGGACTTCTTGGCGTTCTTGGCGGCGGCGA
TGTTCTGGCAGAGCGTCTGGAGCTTGGCGTCGACGGAGGCGGTACGCCGCCTGGTCGTAGGCAAGCGCCGCCTCCTCGGCGGTGTCGAAGGTGCCGAGCC
AGAGCCGCGTGCGGTTCCGCGGGAGGCGGATCTCCGCCACCCACTTCCCCCAGTGCCGCTGCCGCACGCCGCGGTACAGCT