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Detailed information on CNT30520678


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 4e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708948Setaria italicaGlycine max19.0220.5182.14112forward
CNT30554858Setaria italicaOryza glaberrima52.830.6189.71311forward
CNT30440289Setaria italicaAegilops tauschii32.638.0288.54192forward
CNT30251780Setaria italicaAvena sativa41.2644.0290.12243forward
CNT30228634Setaria italicaAnanas comosus25.315.5991.28149forward
CNT30347505Setaria italicaEragrostis tef20.8814.3293.5123forward
CNT30364751Setaria italicaSorghum bicolor25.310.3590.6149forward
CNT30620999Setaria italicaCajanus cajan20.888.1383.74123forward
CNT30371073Setaria italicaOryza glumipatula24.9614.9894.56147forward
CNT30107802Setaria italicaOryza longistaminata20.5414.4995.87121forward
CNT30150787Setaria italicaBrachypodium distachyon16.1325.9692.6395forward
CNT30604553Setaria italicaOryza punctata20.548.0895.04121forward

Expression of CNT30520678

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MFWQSCWSLASTETWSGPREAVGGLVVGERCLLGGVEGAEPEAGAVAREADLRHPLAPVPLPHAAVQLL

>peptide 2 (29 aa)
EMSKIPSARRPLSFCCCSSSRSQEGMAGG*

>peptide 3 (47 aa)
MSNCWWGRRMTWRLRRTSWRPSWMRRCSGRAAGAWRRRRRGAGRGRR*

Sequence

>CNT30520678
GCGAGATGTCAAAAATCCCATCTGCGCGACGGCCGTTAAGCTTCTGCTGCTGTAGTAGTAGTAGGAGCCAAGAAGGAATGGCGGGTGGTTAATTGGCGGC
GAGGAGGGAGTCCCAGTCGATCTCGTACGACGGGTACTTGGTGAGGGCGAAGCCGGCGGCCTCGTCCCACGGTGCCTCGCTGAAGTCCAGCTGCTGCATC
TCCGGCACCGTCGACTCGGGCGAGGCGGACGGCGACGGGGACGGACACGAGGACTCGGCGGCGGACTCGAGGCAGGACGAGGTCGCGTCGTCGGAGGACG
GCGATGAGCAATTGCTGGTGGGGGCGGAGGATGACGTGGCGGCTGCGGCGGACTTCTTGGCGCCCTTCTTGGATGCGGCGATGTTCTGGCAGAGCTGCTG
GAGCTTGGCGTCGACGGAGACGTGGAGCGGGCCGCGGGAGGCGGTAGGCGGCCTGGTCGTAGGCGAGCGCTGCCTCCTCGGCGGTGTCGAAGGTGCCGAG
CCAGAGGCGGGTGCGGTTGCGCGGGAGGCGGATCTCCGCCACCCACTTGCCCCAGTGCCGCTGCCGCACGCCGCGGTACAGCTTCTGCG