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Detailed information on CNT30554858


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520678Oryza glaberrimaSetaria italica50.8987.7887.23517forward
CNT30440289Oryza glaberrimaAegilops tauschii29.1358.6186.49296forward
CNT30251780Oryza glaberrimaAvena sativa34.3563.2286.82349forward
CNT30137714Oryza glaberrimaLolium perenne35.6319.7884.81362forward
CNT30371073Oryza glaberrimaOryza glumipatula88.4891.6496.89899forward
CNT30103455Oryza glaberrimaOryza rufipogon74.872.4599.47760forward
CNT30604553Oryza glaberrimaOryza punctata69.294787.22704forward

Expression of CNT30554858

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSRRRRRRQRTSWRSWRRRCSGRASGAWRRRRRGAGRGRRYAAWS*

>peptide 2 (67 aa)
MFWQSVWSLASTEAWSGPREAVRRLVVGKRRLLGGVEGAEPEPRAVPREADLRHPLPPVPLPHAAVQL

Sequence

>CNT30554858
AATTTTAACAACGACGCTAAATAATAATAGTAGTAGTAGTAGAGGTAATTCACATTACAAGTTCTTATAACACGCTAATAATATTACAAGACATAATAAT
AATAATAATAATAATGCTACTACTACTGTTTACAACCTGTAAGATCAGCAGTAGAAGGTAATAACAGACTTTAGAAGAGCAATGGACGCCACGGCCGGAG
TAACTGACCAGTGACCGGCCACCGGAGACGCACGCCGGACACAAAAACGCCGGCTGCCGGTAGCATCGGCGTCTCCGGTTGAGGAAGAACACCAACCAAC
CCTAGCATCTACAGAGGAAACAAGTCCGGAGAGAGATCGATCTACGTACACAAACGAACCAAACCAAAAGGATTAGGGACTTAAAAACTGCTAATCCATG
CCCGTCCGTGCGGTGCAGAATGTCTAAAATCCCATCTGCACGGCGGCGGCGGCGGCGACGATTAGGCTAACGACGGCGTGAGTACTAGCCAAGAAGTGGT
GGTAGTGTTAATTGGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTAGGACGGGTACTTGGTGAGGGCGAAGGCGGCGGCCTCGTCCCACGGCGCCTCGCT
GAAGTCGAGCTGCTGCATCTCCGGCACGGTCGCCGGCGTCTCGGCCGTGGTGGCGGCGGAGGACGGCGACAGGGAGGGCGACGAGTCGGCGGACTCCAGG
CAGGACGACGCGTCGTCGGAGGACGGCGACGAGCAGTTGCTGGTGGGCGCGGAGGATGTCGCGGCGGCGGAGGCGGAGACAGAGGACTTCTTGGCGTTCT
TGGCGGCGGCGATGTTCTGGCAGAGCGTCTGGAGCTTGGCGTCGACGGAGGCGTGGAGCGGGCCGCGGGAGGCGGTACGCCGCCTGGTCGTAGGCAAGCG
CCGCCTCCTCGGCGGTGTCGAAGGTGCCGAGCCAGAGCCGCGTGCGGTTCCGCGGGAGGCGGATCTCCGCCACCCACTTCCCCCAGTGCCGCTGCCGCAC
GCCGCGGTACAGCTTC