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Detailed information on CNT30480204


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 2e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070976Arabidopsis halleriQuercus suber92.8266.1482.14336forward
CNT30124866Arabidopsis halleriPhyscomitrium patens43.6527.7283.54158forward
CNT30264220Arabidopsis halleriBrassica rapa96.1343.1889.37348forward
CNT30716010Arabidopsis halleriMalus domestica golden46.6929.1483.43169forward
CNT30360875Arabidopsis halleriLactuca sativa48.3423.382.86175forward
CNT3022022Arabidopsis halleriPopulus trichocarpa43.6534.5782.28158forward

Expression of CNT30480204

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLLDPPLSSTGQTLRQGKVGQVLHQEAHLRFCTLQ*

>peptide 2 (45 aa)
QTLFSGDKVGGVSPSVVSHRVCNVIEQILYRTFTRNNGLNKESKH*

Sequence

>CNT30480204
ATCAAACTCTATTTTCCGGGGACAAAGTTGGTGGCGTAAGCCCAAGCGTTGTTAGCCACAGGGTCTGCAATGTGATCGAACAGATTCTCTATCGGACCTT
TACCCGTAACAATGGCTTGAACAAAGAATCCAAACATTGAGAACATCGCAAGACGACCGTTTTTGAGCTCCTTCACCTTCAATTCCGAGAATGCTTCTGG
ATCCTCCGCTAAGTTCAACGGGTCAAACGCTCCGCCAGGGTAAAGTGGGTCAAGTCCTTCACCAAGAGGCCCACCTCCGATTCTGTACCCTTCAATGAAT
CCCATTAGCACAACTTGACAAGCCCAAATGGCTAATATGCTTTGCGCGAGCACGGGGTAAAG