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Detailed information on CNT3058205


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 2e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639243Amborella trichopodaNymphaea colorata26.7219.4381.97183forward
CNT30381130Amborella trichopodaManihot esculenta24.825085.88170forward
CNT30526626Amborella trichopodaPhaseolus vulgaris20.7340.886.62142forward
CNT30630022Amborella trichopodaVigna unguiculata19.5646.5385.07134forward
CNT30711140Amborella trichopodaGlycine max30.0718.3688.83206forward
CNT30156649Amborella trichopodaPistacia vera30.2213.4585.51207forward
CNT30564558Amborella trichopodaActinidia chinensis25.2645.7790.17173forward
CNT30238350Amborella trichopodaBrassica oleracea25.2616.7884.97173forward
CNT30510187Amborella trichopodaSolanum lycopersicum23.518.2581.99161forward
CNT3062296Amborella trichopodaArabidopsis lyrata24.6736.3485.21169forward
CNT30207651Amborella trichopodaHelianthus annuus29.6417.6284.73203forward
CNT30620568Amborella trichopodaCajanus cajan30.0729.2687.38206forward
CNT30645477Amborella trichopodaCannabis sativa24.8244.6287.06170forward
CNT3022022Amborella trichopodaPopulus trichocarpa24.3836.5485.63167forward
CNT30726147Amborella trichopodaLupinus angustifolius29.6429.5989.16203forward

Expression of CNT3058205

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MDQVGVAQVVETAFTEDLGSCLEPHWLLKLNLDPLLEHLGCYTPKGTEHCPSPVNH

Sequence

>CNT3058205
TGCCACCTCTCTTTTTTAAAAAAAAATTAACCAAATTTGTCAAATGTATTGGATGCTCATACTTTCCCCTCAAAATCAAAATCTAAATACTACATTCACA
TTACTACATGATTATATGTGAGATACCATCATAGTTACAAAACCAATACACCGACACACACCCACACACACACAAATTAGGGGGAATCAAATGGACACTT
CACAATGACACTTGTGGATGCTGCTGCACTAGCAATCTAAGAACCTGGCACAAACTTGGTGGCATAAACCCAAGCATTGTTAGCCACAGGGTTCTCAAGG
TGATCCAAGAGGTTCTCCAATGGACCCTTTCCAGTCACTATGGCTTGAACAAAGAAACCGAACATTGAGAACATAGCAAGCCTCCCATTCTTGATCTCCT
TAACCTTGAGCTCAGCAAAAGTGATAGGATCATCAGCAAGGCCATTGATGCGATAGCCCTCGACCAAGCCCATGAGCACGACTTGGAACCCTAGGACCGC
TAAGATGCTTTGTGCATGGACCAAGTTGGGGTTGCCCAAGTAGTCGAGACCGCCTTCACTGAAGATTTGGGCTCCTGCCTTGAACCACACTGGCTCCTTA
AGCTGAACCTTGACCCACTTTTGGAGCACCTCGGGTGTTATACACCCAAGGGCACCGAGCATTGCCCATCTCCCGTGAATCACCT