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Detailed information on CNT30639243


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 1e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516186Nymphaea colorataJuglans regia13.3832.3987.3126forward
CNT30728364Nymphaea colorataCorchorus capsularis18.3724.7987.86173forward
CNT3070976Nymphaea colorataQuercus suber16.0329.7284.11151forward
CNT30381107Nymphaea colorataManihot esculenta14.5422.6885.4137forward
CNT30526626Nymphaea colorataPhaseolus vulgaris17.0946.2683.85161forward
CNT30630022Nymphaea colorataVigna unguiculata13.9145.4985.5131forward
CNT30710854Nymphaea colorataGlycine max25.0515.8383.9236forward
CNT30156649Nymphaea colorataPistacia vera26.9616.580.71254forward
CNT30564423Nymphaea colorataActinidia chinensis24.4236.5188.26230forward
CNT30238350Nymphaea colorataBrassica oleracea24.6322.581.03232forward
CNT30510187Nymphaea colorataSolanum lycopersicum1920.2982.68179forward
CNT3062296Nymphaea colorataArabidopsis lyrata21.9744.5282.61207forward
CNT30207651Nymphaea colorataHelianthus annuus26.9622.0581.89254forward
CNT30620568Nymphaea colorataCajanus cajan23.7831.8285.27224forward
CNT30357963Nymphaea colorataLactuca sativa27.0737.0681.18255forward
CNT30645477Nymphaea colorataCannabis sativa23.9959.3284.96226forward
CNT3058205Nymphaea colorataAmborella trichopoda19.4326.7281.97183forward
CNT3022022Nymphaea colorataPopulus trichocarpa18.3737.8688.44173forward
CNT30726943Nymphaea colorataLupinus angustifolius28.6642.9984.07270forward

Expression of CNT30639243

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTVLILSPFQWEINTSSSNLYERAHKMDYVAVVLPTTLVCSI*

>peptide 2 (54 aa)
MNSGLKCCSVSVSLHLVDEKCPFKNVESKGSYEANQNKDEIMVCLLPPIIEYKI*

>peptide 3 (32 aa)
MENMASRPFLISFTLSSARVTGSSARPSGSKY*

>peptide 4 (41 aa)
MSVQLVQDVKQKLTIIQPDEQWTQMLQCQCVFTSSGREMPF*

>peptide 5 (29 aa)
MRQALPIYHGSPVIVASCQCSWCRMSNRN*

Sequence

>CNT30639243
AAGAAATCTACAGCGACGATGCTGAAAACGTTACAATCACATTAAAAGCTGGCTATCTGAATATTAAACTTGAATAATTGATACATAAGCATATCAACAA
ATTCACATTCTCCACCATGTAAGAAAGAGTTCTAAGACCCAGGGACAAACTTGGTAGCATAGACCCAGGCATTGTTGGCAACTGGGTTGTCAAGATGGTC
TAAGAGATTCTCAAGTGGGCCTTTTCCGGTAACAATGGCCTGAACAAAGAACCCGAACATGGAGAACATGGCTAGCCGACCATTCTTGATTTCTTTCACT
TTGAGCTCCGCAAGGGTAACAGGGTCGTCAGCAAGACCAAGTGGGTCAAAGTATTGACCACCAGGGTACAGATTGTTGCCTTCTCCTACACCAGGGAGGC
CACCTTCAGAGAAGATTTGAGCTCCTGCCTTGAACCACACTGGCTCTTTGAAGTCCACCTTCACCCACTTCTCCAGGACCTCAGGTGTGAGGCAACCCAA
TGCGCCAAGCATTGCCCATCTACCATGGATCACCTGTGATAGTAGCATCATGTCAGTGCAGCTGGTGCAGGATGTCAAACAGAAACTAACTATTATTCAG
CCAGATGAACAGTGGACTCAAATGCTGCAGTGTCAGTGTGTCTTTACATCTAGTGGACGAGAAATGCCCTTTTAAAAATGTAGAATCGAAGGGGTCATAT
GAGGCAAACCAGAACAAGGATGAAATCATGGTTTGTCTACTTCCACCCATTATTGAATATAAAATTTAAGGTTTAGCTTAGATGACTGTCCTGATATTAT
CCCCTTTCCAATGGGAAATAAACACCAGCAGTTCTAATTTGTACGAACGTGCACACAAAATGGATTATGTTGCAGTTGTTTTGCCTACTACTCTTGTGTG
TTCGATCTAATTGAAAGCGGAGAAGCACGAGTTTTCTGGTTC