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Detailed information on CNT3062296


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 1e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639243Arabidopsis lyrataNymphaea colorata44.5221.9782.61207forward
CNT30500934Arabidopsis lyrataCoffea canephora28.178.1788.55131forward
CNT30381130Arabidopsis lyrataManihot esculenta34.6247.3585.09161forward
CNT30526626Arabidopsis lyrataPhaseolus vulgaris32.0442.8285.91149forward
CNT30710734Arabidopsis lyrataGlycine max73.7656.2381.92343forward
CNT30510187Arabidopsis lyrataSolanum lycopersicum37.8519.9584.09176forward
CNT30620568Arabidopsis lyrataCajanus cajan40.8626.9983.68190forward
CNT30355896Arabidopsis lyrataLactuca sativa30.9724.4988.19144forward
CNT30645477Arabidopsis lyrataCannabis sativa41.5150.6686.01193forward
CNT3058205Arabidopsis lyrataAmborella trichopoda36.3424.6785.21169forward
CNT3022022Arabidopsis lyrataPopulus trichocarpa42.3743.1183.76197forward
CNT30726147Arabidopsis lyrataLupinus angustifolius32.0421.7291.28149forward

Expression of CNT3062296

Peptides detected in this lncRNA

>peptide 1 (51 aa)
RITSRPKNLSSRCKLSCESPRIVSNGVVEMVKEILQRTFSSNDGLNKEAKH*

Sequence

>CNT3062296
AGAATCACATCAAGACCTAAAAATTTAAGCTCCAGGTGCAAACTTAGTTGCGAAAGCCCACGCATTGTTAGCAACGGGGTTGTCGAGATGGTCAAGGAGA
TTCTCCAAAGGACCTTTTCCAGTAACGATGGCTTGAACAAAGAAGCCAAACATTGAGAACATAGCCAATCTTCCATTCTTGATCTCTTTCACCTTGAGCT
CAGCAAAAGTAACTGGATCATCAGCGAGACCCAACGGGTCAAAGTATTGTCCACCGGGGTACAAGTCGATGACTTGGAAGCCAAGGACGGCTAAAATGCT
CTGAGCATGGACTAGGTTTGGGTTGCCTAAGTAGTCCAAACCGCCTTCGGAGAAGATTTGTGAACCGGCTTTGAACCAGACTGGTTCTTTGAAGTCCACA
CGGACCCACTTTTGAAGAACTTCAGGGGTTATGCAACCAAAAGCTCCCAACATTGCCCATCTCCC