« Back to Cannabis sativa search


Detailed information on CNT30645477


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 2e-45

BLAST vs NONCODE:
NONBNAT003428, E-value = 4e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639243Cannabis sativaNymphaea colorata59.3223.9984.96226forward
CNT30269348Cannabis sativaChenopodium quinoa38.3231.5385.62146forward
CNT30728364Cannabis sativaCorchorus capsularis35.4319.3485.19135forward
CNT3070976Cannabis sativaQuercus suber25.218.988.5496forward
CNT30381130Cannabis sativaManihot esculenta42.7847.9487.12163forward
CNT30526626Cannabis sativaPhaseolus vulgaris38.0641.6786.21145forward
CNT30629897Cannabis sativaVigna unguiculata28.618.986.24109forward
CNT30505939Cannabis sativaNicotiana attenuata34.916.8990.98133forward
CNT30710934Cannabis sativaGlycine max54.0713.6887.86206forward
CNT30156649Cannabis sativaPistacia vera55.9113.8483.1213forward
CNT30121647Cannabis sativaPhyscomitrium patens43.0421.9384.76164forward
CNT30564558Cannabis sativaActinidia chinensis58.7959.2688.39224forward
CNT30238350Cannabis sativaBrassica oleracea57.2221.1483.03218forward
CNT3062296Cannabis sativaArabidopsis lyrata50.6641.5186.01193forward
CNT30207651Cannabis sativaHelianthus annuus57.2218.9283.94218forward
CNT30620568Cannabis sativaCajanus cajan54.3329.483.57207forward
CNT30355896Cannabis sativaLactuca sativa49.3431.9785.11188forward
CNT30409807Cannabis sativaPapaver somniferum32.5516.8287.9124forward
CNT30572261Cannabis sativaVitis vinifera56.1726.1684.11214forward
CNT3058205Cannabis sativaAmborella trichopoda44.6224.8287.06170forward
CNT3022022Cannabis sativaPopulus trichocarpa53.2844.4284.24203forward
CNT30726943Cannabis sativaLupinus angustifolius50.9230.8985.57194forward

Expression of CNT30645477

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MENIASLPFLISLTLSSAKVTGSSARPNGSKHWSLVLCFDQEMGWVLVMCLSYRWLPLAFLGFW

Sequence

>CNT30645477
TCATCTCACTTGTCATAACATCAAAATATTATTAAAACATTTTAAAGAAGAAAATTACTACTCTACGACCCAGGAACAAACTTTGTAGCATAGACCCAAG
CATTGTTAGCAACTGGGTTGTCAAGGTGGTCAAGTAAGTTCTCAAGTGGTCCCTTTCCAGTAACAATAGCTTGAACAAAGAACCCAAACATGGAGAACAT
AGCAAGTCTACCATTCTTGATCTCCTTAACCTTGAGCTCAGCAAAGGTAACTGGGTCATCAGCTAGGCCCAATGGGTCAAAGCATTGGAGCTTGGTCCTC
TGTTTTGACCAAGAAATGGGGTGGGTCTTAGTAATGTGCTTGAGCTACCGGTGGCTGCCATTAGCATTTCTTGGGTTTTGG