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Detailed information on CNT30238350


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 1e-121

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639243Brassica oleraceaNymphaea colorata22.524.6381.03232forward
CNT30526626Brassica oleraceaPhaseolus vulgaris11.8335.0686.89122forward
CNT30630022Brassica oleraceaVigna unguiculata8.3429.8689.5386forward
CNT30710645Brassica oleraceaGlycine max31.8153.9582.62328forward
CNT30564423Brassica oleraceaActinidia chinensis33.0754.1380.65341forward
CNT30620568Brassica oleraceaCajanus cajan18.4326.9983.68190forward
CNT30645477Brassica oleraceaCannabis sativa21.1457.2283.03218forward
CNT3058205Brassica oleraceaAmborella trichopoda16.7825.2684.97173forward
CNT3022022Brassica oleraceaPopulus trichocarpa20.7646.8384.11214forward
CNT30726147Brassica oleraceaLupinus angustifolius20.9531.4986.11216forward

Expression of CNT30238350

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRKPSTNPIRITWKPRTAKMLWAWTRFGLPK*

>peptide 2 (30 aa)
GFVVLVKHNHKIIVDSAERHVFVLELFFCA*

>peptide 3 (30 aa)
MFISFQKDYILRLKKIKHQVQTLLQKPKHC*

>peptide 4 (29 aa)
MLKPLSLSRILSVCFLFVVSFFFFAGLVEN

Sequence

>CNT30238350
GGGTTTGTTGTATTAGTAAAACACAATCACAAGATCATTGTAGATTCAGCTGAGAGACATGTATTTGTTTTGGAACTTTTTTTCTGTGCATAGCAAATAG
AGTGTTGTAATTTGCAGAGGAACAAGAAAGGTTATGTTCATATCATTTCAAAAGGATTACATTTTAAGACTTAAAAAAATCAAGCACCAGGTACAAACTT
TGTTGCAAAAGCCCAAGCATTGTTAGCAACAGGGTTATCAAGATGGTCAAGGAGATTCTCTAAAGGACCCTTTCCTGTAACAATGGCTTGAACAAAGAAG
CCAAACATTGAGAACATAGCCAACCTTCCATTCTTGATTTCCTTCACCTTAAGCTCGGCGAAAGTAACCGGATCATCCGCGAGACCCAGCGGGTCAAAGT
ATTGCCCGCCCGGGTACAAGTCATTGCCTTCACCAACACCATCAAGACCGTTGATGCGGAAACCTTCAACTAATCCCATTAGGATAACTTGGAAGCCAAG
GACGGCTAAAATGCTTTGGGCGTGGACTAGGTTTGGGTTGCCTAAGTAGTCCAAACCGCCTTCAGAGAAGATTTGTGAACCGGCTTCAGGGTCTGCGGAT
AAACCAGCGGTGTCCCAACCATAGTCTCCGGGAAACTCTCCGGTGAGGTAAGACGGGGTTTGGACGGAAAACGGTCCTAAGTACTTAACTCTGTCTGGTC
CGTACCAAAGATCATTCCCCTTCACATGTCAAGTTTAAAAAGAAAAAGAAAATCAGACACCAACTTAATAGCATAGATGGAAACTCTTAAACTTAAACAA
GAGATTTAGGACAAAAAGAAACAAACCATAGTATACTTGGGAGATCCGAGAGAGACAGCATCACGAAGAGGGTTGAAGGTGGAGCCTTTAGTCTGTCCAA
GAAATGGTGTTGGGGTCAGAACACTGCTTGAGCTCATGAATGTTGAAGCCATTGAGTCTCTCTAGGATTTTGAGCGTTTGTTTTCTCTTTGTGGTGTCGT
TCTTCTTCTTTGCTGGTTTGGTGGAGAATTG