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Detailed information on CNT30121888


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03683|BIP3_TOBAC, E-value = 1e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696916Physcomitrium patensOryza sativa7.5435.7383.87124forward
CNT30522780Physcomitrium patensSetaria italica17.5834.278.89289forward
CNT30535317Physcomitrium patensEucalyptus grandis7.5421.8783.87124forward
CNT30383257Physcomitrium patensTriticum turgidum16.6741.4578.47274forward
CNT30588413Physcomitrium patensMusa acuminata7.5454.8784.68124forward
CNT30510893Physcomitrium patensSolanum lycopersicum4.0832.6891.0467forward
CNT30440539Physcomitrium patensAegilops tauschii7.5423.4484.68124forward
CNT30450032Physcomitrium patensSaccharum spontaneum16.6734.2179.2274forward
CNT305922Physcomitrium patensZea mays11.9853.6880.2197forward
CNT3067065Physcomitrium patensLeersia perrieri7.5429.1887.1124forward
CNT30361391Physcomitrium patensSorghum bicolor16.6732.7479.56274forward
CNT30369286Physcomitrium patensOryza glumipatula7.5420.7785.48124forward
CNT30154479Physcomitrium patensPrunus persica11.4443.3279.79188forward
CNT30151237Physcomitrium patensBrachypodium distachyon7.5423.482.26124forward
CNT30578217Physcomitrium patensOryza barthii7.5427.6283.87124forward
CNT30496988Physcomitrium patensDigitaria exilis16.6728.6681.02274forward

Expression of CNT30121888

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MPKLPSSIASKSTRVPTRSYGRWSLIWILTLNQKDHLLLHRLHLLGKFILKSLLAFKDFILQVFLPSIPILKVCHFKKGGKWFNL*

>peptide 2 (31 aa)
MAASTASSIFFLSAASKLAAILSSLIVFLML*

>peptide 3 (31 aa)
MFQACMEMKLGILWSFFFHNSSCYLSMSSTI*

>peptide 4 (31 aa)
MMDNGLRIEFEFPQLHTNVFENFLCFKHVWR*

>peptide 5 (59 aa)
MVYGLNLSFHSSIQMSLRIFYVSSMYGDETRDSMVFLLPQFFLLFINVFNYLSYLLGIF*

Sequence

>CNT30121888
TTATTTTTTTTATTAGCCATATTGAGGTTGACCACCAATTAATGGAATAAATCCTTGTTGAATATATAAACTTGAGGGAAAATATTGGATTTGATAATTA
TTGTTACAATCATAAAATAAATTAGGAGGTTTTAAATTATTATCTAAATCTGAGGTTCTTGTCTCCTTCAATTGATCTTCGGCTTATTATTGATAATTTA
TTTATAAAATTTTTAAAGGAATTACCTTGTCAAGTTATCTACACATATCCATAGGATGGTTTCTTCTACAATTTTTACATACTATTCCATTCTCTATCCA
ATAATTCTCAAGTAGATGTTTTTTTCCACAAAAATATTATACTTCTTGTTATTGTCATTGTTGATTTTTAAATCCTTGAGTAATATTTTTTTATAGTTGA
AATTCGGAATTGAAATCTATTATTTCTTAATTCCTATAAATTAAGATATACAATTGCCACCTTCTTTGATTTTGATGGTAACTTTGCTGATTTGAATAAA
ATTGGCCTATATGCCTAAATTGCCTTCATCAATTGCATCAAAGTCTACAAGGGTGCCTACTAGATCCTATGGAAGGTGGAGCTTGATTTGGATTTTGACT
CTTAATCAAAAAGATCATTTGCTCTTGCATAGGCTTCATTTGCTAGGCAAGTTTATTTTAAAATCCCTTTTGGCTTTTAAAGACTTTATTCTTCAAGTCT
TCCTTCCATCTATTCCTATCCTCAAGGTATGTCACTTCAAGAAGGGTGGGAAGTGGTTTAATCTCTAAAGATGATGGATAATGGTTTACGGATTGAATTT
GAGTTTCCACAGCTCCATACAAATGTCTTTGAGAATTTTCTATGTTTCAAGCATGTATGGAGATGAAACTAGGGATTCTATGGTCTTTCTTCTTCCACAA
TTCTTCTTGCTATTTATCAATGTCTTCAACTATTTGAGCTATTTACTTGGCATCTTTTAAATTATTTGAACTTTCTTTAAGGATTTTCTAAATTGTCCCT
TTAGTATTAAATCCTTGAAAAAGAAAGTGGGTGACGGTATCATCTATGAGAAGAGTTCCTACAAATTGAATTATTACAAGCTCAAATCACCAAATATATT
CAAAAATTTCTTCGTCTTTTCCTTGTTTAAGAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAATGGGGTGGCTATCCCTTCTAACAGCTTCACTGCAAAA
GAATTAAACAGCTCAACCAAATAGAAGCACCACAATAGTGCAAAAATCAATCTATAAATTAGTCGACCTCCTCAATCTTGGGGCCGGCACCAGACGGAGC
AGCATCATCATCTCCTCCGTACGAGGGGGCACCACCCGCGGCACCTCCTGCACCTCCCTGGTACATGCGCGCGATGATGGGGTTGCAAACGCTCTCCAAC
TCCTTCATCTTGTCCTCGAATTCGTCGCTCTCTGCCAATTGATTGTGGTCCAACCATTGGATGGCAGCCTCGACTGCGTCCTCAATCTTTTTCTTGTCAG
CGGCATCCAAGTTGGCTGCAATCTTGTCGTCCCTGATTGTGTTCCTCATGTTATAGGCGTAGTTCTCAAGGCTATTCTTTGCCTCGATCTTCTTCTTGTG
GTCCTCGTCCTCAGACTTGTACTTCTCGGCTTCCTGGACCATCT