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Detailed information on CNT30148543


BLAST search results

BLAST vs Swiss-Prot:
sp|B3TNB8|PSBD_BRADI, E-value = 2e-167

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674625Brachypodium distachyonSetaria viridis8.2854.2398.7154forward
CNT3020382Brachypodium distachyonCitrullus lanatus14.7955.1188275forward
CNT30198677Brachypodium distachyonPisum sativum18.3497.1586.22341forward
CNT30284073Brachypodium distachyonTriticum aestivum49.5429.2695.66921forward
CNT30219855Brachypodium distachyonHordeum vulgare12.6994.498.31236reverse complement
CNT30555990Brachypodium distachyonOryza glaberrima49.3858.5194.34918forward
CNT30436372Brachypodium distachyonAegilops tauschii18.9352.396.02352forward
CNT30257720Brachypodium distachyonAvena sativa28.8973.1696.83537forward
CNT30664842Brachypodium distachyonTriticum dicoccoides29.6481.0396.19551forward
CNT3077544Brachypodium distachyonBrassica juncea28.5633.2788.89531forward
CNT3067537Brachypodium distachyonLeersia perrieri10.0663.3992.51187forward
CNT30208139Brachypodium distachyonHelianthus annuus16.8992.6387.58314forward
CNT30369387Brachypodium distachyonOryza glumipatula16.1470.5984.67300forward
CNT30481239Brachypodium distachyonChara braunii18.2462.7880.24339forward
CNT30426340Brachypodium distachyonPapaver somniferum31.0972.789.62578forward
CNT3054279Brachypodium distachyonAmborella trichopoda19.954.7385.95370forward
CNT30116821Brachypodium distachyonOryza nivara19.928.8896.22370forward
CNT3039596Brachypodium distachyonMarchantia polymorpha7.6922.6393.01143reverse complement

Expression of CNT30148543

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MKKSNPSFPICSLLHGWKNKNGGFLKKKDFRNQFLCVVERSCDLFLFL*

>peptide 2 (43 aa)
MLIFNSPKHFVACYALPRLWVPRYPPQAFPLLNLAINVKAMPS*

>peptide 3 (52 aa)
MKRVQRPIMKSLEEKDESKYRCYAKTRRKEPTGLPQWINKEYRNKNSDWTRE*

Sequence

>CNT30148543
CGAAAAAGGATTTGCATCTGAGATGTTTCTAGAGGTTAGTAGATCCTTTTATTTTTATATGGCTGTGTTCTATTTCTAGGAGTAAAATAGGGATTAAGCT
GTGGAGAGATGGCTGAGTGCTTGAGTTGGGTTAAAAGCGCGAAAAGTATTTGCACCATCACCGTCTTCGAATAGAGTGTTTTCTACGGTCGCTCCATGAA
TAGCGCATAGGAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAACGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCG
AAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCGGATTGCCCCAGTGGATAAATAAGGAATACAGAAACAAAAACAGCGATTGGACCAGAG
AATGAGATTGCATTATAAGGCCGCAATTGAATAGACCGAGCAAGTTCAAATTGGCGTAACATGAAACCTATTAGTGCAAAAGCCCCGTGGAGAGCTACAA
AAGTCCATAGGCCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCCGGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGT
AGAAACTGCTGCGGTTAAGAAATTACAACCTTCCAAATAGGAACTAGCCAATCCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCACCCT
CCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAAGCCGGACCATCCTACAAAAACGAAACGGTCCCTTCGTAACCAGTCGTCCACAGTATCAAATAGAT
CCTTTTCTTCTTTAGGAATTCTACCAAGGGCTATAGTCATAGTGATCCTCCTATTCAATTACTTCAACCATTTCCGAGCACCTCGTATCACTTCCAAGGC
ATATGATAGTTTGATTATCTGTGGACGATTTCTTTCTCGTGCAATGCCGTTTTTCAATGGTCTCGAAGATATAAATTTTTTCATTTTTATCTATGGAGTC
ACAACCGAGGTCGTGGTAAATCCATAAATTGGATTCGATTTTTTTCTTATACTTTTTTCTTATACTTCTTATACTAAAGAACTAAACATTTGAATTCACC
ATTATTCCATGACTCCGGTTTCAAAGCCTATCTTTTAAGGGAAAAATGAAAAAAAGTAACCCCTCTTTTCCCATTTGCTCTCTATTGCATGGGTGGAAGA
ACAAAAATGGAGGATTCTTAAAAAAAAAAGACTTTCGAAATCAATTTTTATGTGTAGTGGAAAGGAGTTGCGATTTATTCTTATTCCTATAGAGTATCTA
GTAACAAGAATATAAAATCGTAAATAGCGAAAAATTATTATCTTGCAGGGTCTAAGTCTAAGAAAATAAAAAAAATTCGTTTATACAATTTCATCTATAT
CGAATTTATATATCAGAATAGCGGATAGAGGCATAATTCAAGGAGTCAGGTCTACTTACTTTATCCTTGTTTCCTATTTTATTGTGGGTTTGATAAGAAC
CCTTTTTGCTTTCTTGATAAATTTCGTAGATGTAAAGGGCAGTTTAAAAGGTTGACCTATTTGGGAATCTCCGGATCTATGCTTATTTTCAACTCCCCGA
AGCATTTCGTCGCTTGCTACGCCCTTCCTCGTCTCTGGGTGCCTAGGTATCCACCGCAAGCCTTTCCTCTTTTGAACCTCGCCATTAACGTTAAGGCTAT
GCCATCCTAAGGTGCTACTAAATGGAAGGATCTTATCAACGTCCATGAATGCGAAATCATAGATCGAACTGCCGAATTGGCAAAATTCGGTGCTATCATA
GTATCCGCTAAGTTCACGGGCTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACA