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Detailed information on CNT3077544


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QL14|PSBD_DRANE, E-value = 8e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020382Brassica junceaCitrullus lanatus17.1754.9192.34274forward
CNT30198677Brassica junceaPisum sativum21.396.8791.18340forward
CNT30284073Brassica junceaTriticum aestivum33.2716.8790.02531forward
CNT30539441Brassica junceaBrassica napus28.889.4399.35461forward
CNT30234519Brassica junceaBrassica oleracea23.9334.0599.74382forward
CNT30555990Brassica junceaOryza glaberrima33.3333.9189.66532forward
CNT30436372Brassica junceaAegilops tauschii16.639.3890.19265forward
CNT30257720Brassica junceaAvena sativa18.9841.2891.75303forward
CNT30664842Brassica junceaTriticum dicoccoides19.5545.8889.74312forward
CNT30208139Brassica junceaHelianthus annuus19.6192.3391.69313forward
CNT30688963Brassica junceaTriticum urartu14.7957.9990.25236forward
CNT30481239Brassica junceaChara braunii20.861.4880.12332forward
CNT30426340Brassica junceaPapaver somniferum21.843.7792.82348forward
CNT3054279Brassica junceaAmborella trichopoda22.7453.790.91363forward
CNT30148543Brassica junceaBrachypodium distachyon33.2728.5688.89531forward
CNT30116821Brassica junceaOryza nivara19.1123.8189.84305forward

Expression of CNT3077544

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MIPYNYIHTNKYIDLNFIQRSDDDPFFQKSAN*

>peptide 2 (34 aa)
MGYLNLIFVPVIVLFYIFLLGCILVFDIYLLKDT*

>peptide 3 (37 aa)
LVDKLERQKQKQQLDQRMRLHYKVAIEQIEQVQIDVT*

>peptide 4 (52 aa)
MNCQMTHYSDKEIFFSILFDIYMSMPVKKGKIYYLYLIQYNSLGIIYIIVYI*

>peptide 5 (92 aa)
MMIHFFKRAQIELPHIIRLHMHKNFFLVMFVGIYVLYNILPNGSYQIEVFKIKRGVIRFGLIRSKKSYFFEYEEIKKPLQVPERLGLLKAQK*

Sequence

>CNT3077544
ACCTAGTGGATAAATTAGAAAGACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCAAGTTCA
AATTGACGTAACATAAAACCTATTAATGCGAAAGCACCGTGGAGAGCAACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTG
CTTCAGGACCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAACTAGC
CAATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCAGACCAACCT
ACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAATAAATCTTTTTCGTCTTTGGTAAATTTACCAAGGGCTATAGTCATAGCGATCC
TCCTATTCATCTACTTCAACCATTTCCGAACACCTTTATATATCTTAATGTTATATATTATGTTCAGGACGCTCAAAATTCTATCATTTATTTATGATTT
GATTTCTCGCGCACTGCCCCATAAAATTTAACCTTTAGAATTTCATTTAATTGGTTTCGAAGATCAAAATATTTGATTTTATTGGTCCTTACTTAGGTAA
ACGCATCAACTCAAATTGTTTCTTCCTTGCTATTAGTTTCTTAATAAGTAGTTGAATCTAAATCATGAATTGTCAGATGACTCATTACTCAGATAAAGAA
ATCTTTTTTTCTATTTTATTTGATATCTACATGTCCATGCCGGTAAAAAAAGGGAAAATTTATTATTTATATCTAATTCAATACAATAGTTTAGGAATAA
TTTATATAATTGTTTATATCTAAAATAATAAAATATCCTTCCTTTATATGATCCCCTATAACTATATACATACAAATAAATACATTGACTTGAATTTCAT
CCAGCGGTCCGATGATGATCCATTTTTTCAAAAGAGCGCAAATTGAGTTACCCCATATAATACGTTTACACATGCATAAAAACTTTTTTTTAGTTATGTT
TGTAGGAATCTATGTGTTATACAATATTCTACCAAATGGGTCTTATCAAATCGAAGTTTTTAAAATAAAAAGGGGAGTTATACGATTCGGTCTCATCCGA
TCTAAAAAATCTTATTTTTTTGAATATGAAGAAATAAAGAAGCCATTGCAAGTGCCGGAAAGACTAGGCCTACTAAAGGCACAAAAATAGAGGGTAAGTT
GTTGAAAGTTGTCATAAAATGGGGTACCTCAATTTAATATTTGTACCTGTTATTGTTCTATTCTATATATTTCTATTAGGTTGTATATTAGTATTCGATA
TATATTTACTTAAAGATACTTAGTATAATTATATAATATATATAATAGAAATAATAAAACTACAAGATATTCTAAGATATCTTTAGAATTCAGAATATAA
CAATAACAGGTACAAATATTAAATTGAGGTACCCCATTTTATGACAACTTTCAACAACTTACCCTCTATTTTTGTGCCTTTAGTAGGCCTAGTCTT