Detailed information on CNT30555990


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENJ1|PSBD_ORYNI, E-value = 0.0

BLAST vs NONCODE:
NONVVIT000784, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524665Oryza glaberrimaSetaria italica38.0595.8388.78597forward
CNT3020382Oryza glaberrimaCitrullus lanatus17.4654.9189.78274forward
CNT30201936Oryza glaberrimaPisum sativum21.9238.9191.57344forward
CNT30284073Oryza glaberrimaTriticum aestivum78.2739.0195.031228forward
CNT30221733Oryza glaberrimaHordeum vulgare8.6743.0494.12136reverse complement
CNT30236148Oryza glaberrimaBrassica oleracea33.0133.7291.12518forward
CNT30436372Oryza glaberrimaAegilops tauschii24.657.3693.78386forward
CNT30257720Oryza glaberrimaAvena sativa46.7810095.64734forward
CNT30664842Oryza glaberrimaTriticum dicoccoides43.3410095680forward
CNT3077544Oryza glaberrimaBrassica juncea33.9133.3389.66532forward
CNT3010052Oryza glaberrimaZea mays10.5866.9491.57166forward
CNT30208139Oryza glaberrimaHelianthus annuus19.9592.3388.5313forward
CNT30688963Oryza glaberrimaTriticum urartu25.9410092.87407forward
CNT30351849Oryza glaberrimaEragrostis tef6.9527.3996.33109reverse complement
CNT30367840Oryza glaberrimaSorghum bicolor11.6640.7696.72183forward
CNT30369387Oryza glaberrimaOryza glumipatula15.6857.8895.12246forward
CNT30481239Oryza glaberrimaChara braunii21.6162.7881.71339forward
CNT30426340Oryza glaberrimaPapaver somniferum50.6710091.82795forward
CNT3054279Oryza glaberrimaAmborella trichopoda23.5854.7386.76370forward
CNT30148543Oryza glaberrimaBrachypodium distachyon81.2668.5989.571275forward
CNT30100296Oryza glaberrimaOryza rufipogon20.4671.65100321forward
CNT30116714Oryza glaberrimaOryza nivara24.5450100385forward

Expression of CNT30555990

Peptides detected in this lncRNA

>peptide 1 (52 aa)
EADPELPSTHEYPRLKEYFWCRKSQIQDLPLHGFPGKRSHRHVGSEPGRLRQ*

>peptide 2 (33 aa)
MVSKIEILHFYLWGHSRGRGKSMNLIQLVFLIL*

>peptide 3 (52 aa)
MKWVQRPIMKSLEEEDESKYRCYAKTRRKEPTGLPQWINQEYGNKNSDWARE*

>peptide 4 (34 aa)
MKKSNLSFPTRSLLHGYKNKNRILKKSKDIEKKN*

Sequence

>CNT30555990
ATGAGGCTGATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGG
ATTTCCTGGGAAACGAAGTCATAGGCACGTAGGTTCAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGTACAAATAGCATAA
AGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAAAAGCGATTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGG
GTTAAAAGCGCGGAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACT
CCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCG
CAAAGAACCAACCGGATTGCCCCAGTGGATAAATCAGGAATACGGAAACAAAAACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCAATTG
AACAGACCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCAACAAAAGTCCACAGACCACCTAATTGACACCAA
CGAGTAAAATCCCCTTGTGCTTCCGGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGTGGAAACTGCTGCGGTTAAGAAATTGCAAC
CTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAG
CAATAGGCCAGACCATCCTACAAAAACAAAACGGTCCCTTCGTAACCAGTCGTCCATAATATCAAATAAATCATTTTCTTCTTTAGTAACTCTACCAAGG
GCTATAGTCATAGTGATCCTCCTATTCAATTACTTCAACCATTTCCGAGCACCTTATATCACTTCCAAGGCATACGATAGATTATCTGTGGACGATTTTT
TCTCGTTCAATGCCTTTTTTCAATGGTCTCGAAGATAGAAATTTTGCATTTTTATCTATGGGGTCACAGCCGAGGTCGTGGTAAATCCATGAATTTGATT
CAATTAGTTTTTCTTATACTATAGAAATAAACATTGGAATTCAGGATTATTCCATGATTCCTATTTCCAAGAAAGCCTATTTTTTAAGGGAAAAATGAAA
AAAAGTAACCTCTCTTTTCCCACTCGCTCTCTATTGCATGGGTATAAGAACAAAAATAGGATTCTGAAAAAAAGTAAAGATATTGAAAAGAAAAATTGAC
TTTCGAAATCCATTTTTATGTGTAGCGGAAAGGGGTTGCGATTTCTTCTTATTCCTATAGAACATCTAGTAACAAGAATATGAAATAGTAAATAGCGAGA
AATTCTTGCCTTGCGTGGTCTAAGTCTAAGGAAATACAAAAAAATCCACTTATACAATTTCATCTACAT