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Detailed information on CNT30426340


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBT0|PSBD_LOTJA, E-value = 0.0

BLAST vs NONCODE:
NONVVIT000784, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201936Papaver somniferumPisum sativum35.3531.7993.59281forward
CNT30284073Papaver somniferumTriticum aestivum10025.2590.57795forward
CNT30236148Papaver somniferumBrassica oleracea55.9728.9793.93445forward
CNT30555990Papaver somniferumOryza glaberrima10050.6791.82795forward
CNT30257720Papaver somniferumAvena sativa90.8298.3791722forward
CNT30664842Papaver somniferumTriticum dicoccoides85.1699.5690.55677forward
CNT3077544Papaver somniferumBrassica juncea43.7721.892.82348forward
CNT30208139Papaver somniferumHelianthus annuus15.8537.1796.03126forward
CNT30367840Papaver somniferumSorghum bicolor13.4623.8392.52107forward
CNT30484012Papaver somniferumChara braunii49.3189.780.1392forward
CNT3054279Papaver somniferumAmborella trichopoda22.1426.0490.91176forward
CNT30148543Papaver somniferumBrachypodium distachyon72.731.0989.62578forward
CNT30100296Papaver somniferumOryza rufipogon40.3871.6592.21321forward
CNT30116821Papaver somniferumOryza nivara46.4228.8191.33369forward
CNT30175943Papaver somniferumVigna angularis38.6212.5792.51307forward

Expression of CNT30426340

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKWVQRPIMKSLEEQDESKYSCYTKTRCKEPTRLS*

>peptide 2 (32 aa)
KFRIFRCAYFLGNEVIGTQVQSQADYSKSTHP*

>peptide 3 (41 aa)
QIQDLPLRVFPGKRSHRHAGSEPGRLLQEHSSINRLLVQIT*

Sequence

>CNT30426340
TCAAATTCAGGATCTTCCGCTGCGCGTATTTCCTGGGAAACGAAGTCATAGGCACGCAGGTTCAGAGCCAGGCCGACTACTCCAAGAGCACTCATCCATA
AACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCAT
TGAATAAGTCTCTTCGGCTTGAGTTGGGTTAAAAGCACGGAATGTATTTGCACCGTCACCATCTTCAAATAAAGTATTTTCCACGGTAGCACCATGAATA
GCGCATAAGAGAGCAGCACCCAATACGCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAACAGGATGAATCGAA
ATATAGCTGCTACACCAAAACTAGGTGCAAAGAACCAACCAGATTGTCCTAGTGGATAAATCAGAAATACAGAAACAAAAACAGCAATTGGACCAGAAAA
TGCAATTGCATTATACGGTCGCAATTGAACAGATCGAGCAAGTTCGAATTGACGTAACATGAAACCTATTAGTCCGAAAGCGCCATGGAGAGCAACAAAA
GCCCATAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCAGGACCCCATAGTAGCAACAAAGAATGTGCTAAACTATTAGCAGGAGTAG
AAACTGCGGCGGTTAAGAAATTGCAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGAAGTAACAAAGGTTGTACCTGTGAACCAA