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Detailed information on CNT3020382


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4VZN8|PSBD_CUCSA, E-value = 1e-40

BLAST vs NONCODE:
NONCSAT001803, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524665Citrullus lanatusSetaria italica23.8519.187.39119forward
CNT30632293Citrullus lanatusVigna unguiculata20.6418.292.23103forward
CNT30198677Citrullus lanatusPisum sativum53.9176.6492.57269forward
CNT30284073Citrullus lanatusTriticum aestivum55.118.7488.73275forward
CNT30555990Citrullus lanatusOryza glaberrima54.9117.4689.78274forward
CNT30436372Citrullus lanatusAegilops tauschii52.338.7889.27261forward
CNT3077544Citrullus lanatusBrassica juncea54.9117.1792.34274forward
CNT30208139Citrullus lanatusHelianthus annuus58.9286.7392.18294forward
CNT30688963Citrullus lanatusTriticum urartu48.359.2189.21241forward
CNT30481239Citrullus lanatusChara braunii27.4525.3781.02137forward
CNT3054279Citrullus lanatusAmborella trichopoda55.7141.1289.57278forward
CNT30148543Citrullus lanatusBrachypodium distachyon55.1114.7988275forward
CNT30116714Citrullus lanatusOryza nivara29.0618.8390.34145forward

Expression of CNT3020382

Peptides detected in this lncRNA

>peptide 1 (30 aa)
DIQRRLRSCILPNRNLPIHGYTMKLQRLYL*

Sequence

>CNT3020382
GAGATATACAACGGCGGTTAAGAAGTTGCATCCTTCCAAATAGGAACTTGCCAATCCATGGGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAA
CCTCCGACGGCAAAATAGGCACAAGGAAAGAGCAATAGACCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCGAATA
AATCATTTTCGTCTTTGGTAAATTTACCAACGGCTATAGTCATAGTGATCCTCCTATTCAACTAACTTCAACCATTTTCGAACACCTCATAGTATTTTCA
GGGCCTTCGAGTCTATCATTTCTGTATGATTTCTACTGTCCCTTCTTTCTAATGGGTTTCGAATATAAAAATCATTTTTTGATTGATCCATAACCTGACC
TAGATCAATATTATGAACTCAATACGGTAAATGAAAGTATCGTTCTCGTCTCCATTCTTCGTCACATTGTTGGAACAAAAATTGAATATGTATCAATGG