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Detailed information on CNT30436372


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524665Aegilops tauschiiSetaria italica31.233.7192.86210forward
CNT3020382Aegilops tauschiiCitrullus lanatus38.7852.389.27261forward
CNT30198677Aegilops tauschiiPisum sativum39.2375.2187.12264forward
CNT30555990Aegilops tauschiiOryza glaberrima57.3624.693.78386forward
CNT3077544Aegilops tauschiiBrassica juncea39.3816.690.19265forward
CNT30208139Aegilops tauschiiHelianthus annuus40.1279.6588.89270forward
CNT30688963Aegilops tauschiiTriticum urartu54.8390.6699.46369forward
CNT30366171Aegilops tauschiiSorghum bicolor27.3416.8889.67184reverse complement
CNT3054279Aegilops tauschiiAmborella trichopoda40.4240.2486.76272forward
CNT30148543Aegilops tauschiiBrachypodium distachyon57.3620.7695.08386forward
CNT30116714Aegilops tauschiiOryza nivara40.1235.0692.59270forward

Expression of CNT30436372

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MPFFNGLEERNFPFLSMESQSQPSTSYHFPRHMIVLLSVDDFFVVQCPFSMVSKREISHFYLWSHSHNRGRGKSMNLIRFVFLILFVFLIL*

>peptide 2 (46 aa)
MIVLLSVDDFFIVQCPFSMVSKREISHFYLWSHSHNRAPHITFQGI*

Sequence

>CNT30436372
AAATTACAACCTTCCAAATAGGAACTAGCCAATCCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGCAC
AAGGAAAGAAGCAATAGGCCAGACCATCCTACAAAAACGAAACGGTCCCTTCGTAACCAGTCATCCATAGTATCAAATAGATCATTTTCTTCTTTAGGAA
TTCTACCAAGGGCTATAGTCATAGTGATCCTCCTATTCAATTACTTCAACCATTTCCGAGCACCTCATATCACTTTCCAAGGCATATGATAGTTTTATTA
TCTGTGGACGATTTCTTTATCGTTCAATGCCCTTTTTCAATGGTCTCGAAGAGAGAAATTTCCCATTTTTATCTATGGAGTCACAGTCACAACCGAGCAC
CTCATATCACTTTCCAAGGCATATGATAGTTTTATTATCTGTGGACGATTTCTTTGTCGTTCAATGCCCTTTTTCAATGGTCTCGAAGAGAGAAATTTCC
CATTTTTATCTATGGAGTCACAGTCACAACCGAGGTCGTGGTAAATCCATGAATTTGATTCGATTTGTTTTTCTTATACTATTTGTTTTTCTTATACTAT
AGAAATATAAATAAATTGTTTTTCTTATACTATAGAAAGAAATAAACCTTTGAATTCAGCATTATTCCAAGAC