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Detailed information on CNT30208139


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XQA8|PSBD_POPDE, E-value = 1e-27

BLAST vs NONCODE:
NONCSAT001803, E-value = 1e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524665Helianthus annuusSetaria italica26.2514.2986.5289forward
CNT3020382Helianthus annuusCitrullus lanatus86.7358.9292.18294forward
CNT30632293Helianthus annuusVigna unguiculata30.0918.0291.18102forward
CNT30198677Helianthus annuusPisum sativum92.9289.7490.79315forward
CNT30284073Helianthus annuusTriticum aestivum93.5110.0788.96317forward
CNT30555990Helianthus annuusOryza glaberrima92.3319.9588.5313forward
CNT30436372Helianthus annuusAegilops tauschii79.6540.1288.89270forward
CNT30257720Helianthus annuusAvena sativa24.7811.4489.2984forward
CNT30664842Helianthus annuusTriticum dicoccoides28.0213.9789.4795forward
CNT3077544Helianthus annuusBrassica juncea92.3319.6191.69313forward
CNT30688963Helianthus annuusTriticum urartu71.0959.2189.21241forward
CNT30481239Helianthus annuusChara braunii20.9413.1587.3271forward
CNT30426340Helianthus annuusPapaver somniferum37.1715.8596.03126forward
CNT3054279Helianthus annuusAmborella trichopoda92.3346.387.86313forward
CNT30148543Helianthus annuusBrachypodium distachyon92.6316.8987.58314forward
CNT30116714Helianthus annuusOryza nivara43.9519.3589.26149forward

Expression of CNT30208139

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVNLPRAIVIVILLFNYFDHFRTPHSIFGASK

Sequence

>CNT30208139
AAAGAATGTGCTAAACTATTAGCAAGAGTAGAAACTGCGGCAGTTAAGAAATTGCAGCCTTCCAAATAGGAACTGGCCAATCCATGGGTATACCATGAAG
TTACAAAGGTTGTACCCGTGAACCAACCCCCCTACGGCGAAATAGGCACAAGGAAAGAGCAATAGGCCGGACCAGCCTACAAAAACGAAACGGTCCCTAC
GTAACCAGTCATCCATAATATCAAACAAATCATTTTCGTCTATGGTAAATTTACCAAGGGCTATAGTCATCGTAATCCTCCTATTCAACTACTTCGACCA
TTTCCGAACACCTCATAGTATTTTCGGGGCGTCCAAAGA