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Detailed information on CNT30369387


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524665Oryza glumipatulaSetaria italica38.3526.1693.25163forward
CNT30284073Oryza glumipatulaTriticum aestivum70.359.587.96299forward
CNT30221733Oryza glumipatulaHordeum vulgare59.2979.7589.29252reverse complement
CNT30555990Oryza glumipatulaOryza glaberrima57.8815.6895.12246forward
CNT30435234Oryza glumipatulaAegilops tauschii24.2432.2994.17103forward
CNT3010052Oryza glumipatulaZea mays58.59100.485.54249forward
CNT30148543Oryza glumipatulaBrachypodium distachyon70.5916.1484.67300forward

Expression of CNT30369387

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MGWVGLIRPLFALLINNKKKEFFSITCLFYYNK

>peptide 2 (36 aa)
MKXSRLAQXCLAWSKSKEIQKNPLIQFHLHRIYISE*

Sequence

>CNT30369387
TCGCTCTCTATTGCATGGGTATAAGAACAAAAATAGGATTCTGAAAAAAAGTAAAGATATTGAAAAGAAAAATTGACTTTCGAAATCCATTTTTATGTGT
AGCGGAAAGGGGTTGCGATTTCTTCTTATTCCTATAGAACATCTAGTAACAAGAATATGAAATNGTCAAGATTGGCCCAGANTTGCCTTGCGTGGTCTAA
GTCTAAGGAAATACAAAAAAATCCACTTATACAATTTCATCTACATCGAATTTATATATCAGAATAGCGGATAGAGGCCTCATTCAAGGAGTCAGGTCCA
CTTACTTTATCTTTCTTTCCAATTTTATGGGGTGGGTTGGTTTGATAAGACCCCTTTTTGCTTTGTTGATAAATAATAAAAAAAAAGAGTTTTTTTCTAT
AACCTGCTTGTTTTATTATAACAAG