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Detailed information on CNT3054279


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020382Amborella trichopodaCitrullus lanatus41.1255.7189.57278forward
CNT30198677Amborella trichopodaPisum sativum50.4497.1585.63341forward
CNT30284073Amborella trichopodaTriticum aestivum54.7311.7586.22370forward
CNT30555990Amborella trichopodaOryza glaberrima54.7323.5886.76370forward
CNT30436372Amborella trichopodaAegilops tauschii40.2440.4286.76272forward
CNT30664842Amborella trichopodaTriticum dicoccoides21.621.4787.67146forward
CNT3077544Amborella trichopodaBrassica juncea53.722.7490.91363forward
CNT30208139Amborella trichopodaHelianthus annuus46.392.3387.86313forward
CNT30688963Amborella trichopodaTriticum urartu35.6559.2186.72241forward
CNT30481239Amborella trichopodaChara braunii24.730.9380.84167forward
CNT30426340Amborella trichopodaPapaver somniferum26.0422.1490.91176forward
CNT30148543Amborella trichopodaBrachypodium distachyon54.7319.985.95370forward
CNT30116714Amborella trichopodaOryza nivara22.1919.4886.67150forward

Expression of CNT3054279

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIKERVYDGSIIYIWTITRPLSLSKYRVSKI*

>peptide 2 (34 aa)
MMVRSFIYGRLLAHCPFQNIGFRRYRSHRTNQPR*

>peptide 3 (36 aa)
MDDYSPTVPFKISGFEDIDPTGQTNLGKCMLSRFNY*

Sequence

>CNT3054279
TGACACCAACGGGTAAAATCTCCTTGTGCTTTAGGACCCCACAGTAGCAACAAAAATGTGCTAAACTATTAGCAAGAGTAGAAACTGCAGCGGTTAAAAA
ATTGCATCCTTCCAAATAGGAGCTAGCTAATCCATGGGTGTACCATGAAGTTACAAAGGTTGCACCTGTGAACCACCCTCCTAAAGCAAAATAGGCACAA
GGAAAAAGCAATAGACCAAACCAACCTACAAAAACGAAGCGGTCCCTCCATAGCCAGTCATCCATAATATCAAATAAATCAGTTTCCTCTTTGGAAAACC
TACCAAGGGCTATAGTCATAGTGATCCTCATATTCAACTACTGCAACCATTTTCAAACACCTCATATCATTATGATTAAAGAAAGAGTATATGATGGTTC
GATCATTTATATATGGACGATTACTCGCCCACTGTCCCTTTCAAAATATCGGGTTTCGAAGATATAGATCCCACAGGACAAACCAACCTAGGTAAATGCA
TGCTATCCCGATTTAATTATTGATTCCTATTCCTACATCTGATCCATGAATTGTCTTATGCCTCATCAATCAGATGAAATTTATTAAAAAACTAGCCAGG
AGCAAGTGATCCCTTGTCTCGCTACCAGTTTCTTCTCAAATCCTATCTCCCTGTTCCATCAAACGAATGATTCTTG