Detailed information on CNT30198677


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCSAT001803, E-value = 2e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524665Pisum sativumSetaria italica29.3416.5386.41103forward
CNT3020382Pisum sativumCitrullus lanatus76.6453.9192.57269forward
CNT30632293Pisum sativumVigna unguiculata28.2117.4994.9599forward
CNT30436372Pisum sativumAegilops tauschii75.2139.2387.12264forward
CNT3077544Pisum sativumBrassica juncea96.8721.391.18340forward
CNT30208139Pisum sativumHelianthus annuus89.7492.9290.79315forward
CNT30688963Pisum sativumTriticum urartu67.8158.4886.55238forward
CNT30481239Pisum sativumChara braunii50.4332.7880.79177forward
CNT3054279Pisum sativumAmborella trichopoda97.1550.4485.63341forward
CNT30148543Pisum sativumBrachypodium distachyon97.1518.3486.22341forward

Expression of CNT30198677

Peptides detected in this lncRNA

>peptide 1 (32 aa)
PCASGPHSNNKECAKLLAGVETAAVEKLQPSK*

Sequence

>CNT30198677
CCCTGTGCTTCAGGACCCCATAGTAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAGACTGCTGCAGTTGAGAAGTTACAACCTTCCAAATAGG
AACTTGCCAATCCATGAGTATACCATGAAGTTACAAAGGTGGTACCTGTGAACCAACCCCCCACGGCAAAATAGGCGCAAGGAAAGAGCAATAGACCGGA
CCAACCCACAAAAACAAAACGGGCCCTCCGTAACCAGTCATCCATAATATCAAATAAATCATTTTGATCTTTGGTAAATTTACCAAGAGCTATAGTCATA
GTAATCCTCCTATTCAACTACTTCAAACCATTTCCGAACACCTCCTAGCAT