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Detailed information on CNT30284073


BLAST search results

BLAST vs Swiss-Prot:
sp|P10803|PSBD_SECCE, E-value = 0.0

BLAST vs NONCODE:
NONVVIT000784, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524665Triticum aestivumSetaria italica7.723991.77243forward
CNT3020382Triticum aestivumCitrullus lanatus8.7455.1188.73275forward
CNT30201936Triticum aestivumPisum sativum20.1471.7291.17634forward
CNT30563336Triticum aestivumActinidia chinensis3.6556.9391.3115reverse complement
CNT30236148Triticum aestivumBrassica oleracea22.4646.0391.09707forward
CNT30555990Triticum aestivumOryza glaberrima38.3476.9395.111207forward
CNT30257720Triticum aestivumAvena sativa23.3210097.82734forward
CNT30664842Triticum aestivumTriticum dicoccoides21.610097.79680forward
CNT3077544Triticum aestivumBrassica juncea16.8733.2790.02531forward
CNT3010052Triticum aestivumZea mays6.4882.2691.67204forward
CNT30607747Triticum aestivumGossypium raimondii10.7484.7187.28338forward
CNT30208139Triticum aestivumHelianthus annuus10.0793.5188.96317forward
CNT30628236Triticum aestivumDaucus carota27.1678.6690.64855forward
CNT30688963Triticum aestivumTriticum urartu12.6197.5497.98397forward
CNT30369387Triticum aestivumOryza glumipatula9.570.3587.96299forward
CNT30484012Triticum aestivumChara braunii12.9993.5980.68409forward
CNT30426340Triticum aestivumPapaver somniferum25.2510090.57795forward
CNT3054279Triticum aestivumAmborella trichopoda11.7554.7386.22370forward
CNT30120788Triticum aestivumCitrus clementina3.0244.8191.5895reverse complement
CNT30148543Triticum aestivumBrachypodium distachyon29.2649.5495.66921forward
CNT30100296Triticum aestivumOryza rufipogon10.271.6595.95321forward
CNT30116778Triticum aestivumOryza nivara14.2968.3996.67450forward

Expression of CNT30284073

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MEKIPQESRVPEARDKCHRSLKLQRKLGEVRQIQSTEKYLELPPLALLPNLE*

>peptide 2 (52 aa)
MSFFNLLKSKPLGPLRGSNHEARRSQKRIVSPPKITSPVGERIRYLPKPVGP*

>peptide 3 (56 aa)
MKIKVTLLFPFPLYCMGGRTKIEDSEKKGPSKSNFMCSAKELRFLLIPIEHLVTRI*

>peptide 4 (57 aa)
MIVLSSVDDFFLVQCPFSMVSKREISHFYLWSHNRGRGKSMNLIRFVFLILFVFLIL*

>peptide 5 (29 aa)
MLLSNFMVDLIRTLFAFLINNRQKKRFFI*

>peptide 6 (52 aa)
MKWVQRPIMKSLKEKDESKYRCYAKTRRKEPTRLPQWINKEYRNKNSNWTRE*

Sequence

>CNT30284073
TCCTAGAACAAAATGAGAAGTTGATAACCAACTTCTAGGAGAGACATAATTAACTGCATTGATCTCGGTAGCTACGCCACCCACGGAATTTAAAGAGCCT
AAAGGAGCGTGGGTCATATATTCTGCTGAGCGTCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCCAAACCGTTGGGGCCCCTTAGAG
GTTCTAACCATGAAGCACGAAGGTCCCAAAAACGCATAGTTTCCCCTCCAAAGATAACCTCCCCAGTTGGGGAACGCATTAGATATTTACCTAAACCTGT
GGGTCCTTGAGCGGATCCCACATTAGCTCCAAGACGCTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGCCCGGTGGGTCCATAA
AACTCACTCGGATAAGCTGTATTATTGAACCATACTAAACAACAAGTGATAAAACCAAAGACAGATAAAGCAGCTAAACTATAAGACAAGTAAGCTTCTC
CAGACCATACAAATGCACGGCGAGCCCATGCGAAGGGTTTGGTTAAAATATGCCAAATTCCGCCAAATACACAAATAAAACCCAACCATACATGCCCACC
AATTATATCTTCTAAATCATCTACACTAACAATCCACCCTTCTCCACCAAAAGGAGATTTTAGTAAATAACCAAATATAACACTGGGACTAAGGGTCAAA
TTGGTAATTTTTCTTACATCTCCCCCCCAGGGGCCCAGGTATCATATACACCGCCAAAATAAAGAGCCTTGAGTACTAGAAGAAAAGCACCTAGACCTAA
CAAAATTAAGTGAATACCCAAAATTGTAGTCATTTTATTTCTATCTTTCCAGACATAACCAAAGAATGGAAAAGATTCCTCAAGAGTCTCGGGTCCCAGA
AGCGCGTGATAAATGCCACCGAAGCCTAAAACTGCAGAGGAAATTAGGTGAAGTACGCCAGATACAAAGTACGGAAAAGTATCTAGAACTTCCCCCCCTG
GCCCTACTCCCCAACCTAGAGTAGCTAAGTGTGGAAGTAAAATCAACCCTTGTTCATACATGGGCTTTTCTGGTACGAAATGGGCCACTTCAAATAGGTT
CATTGCTCCGGCCCAGAATACGATTAATCCGGCATGGGCTACATGAGCTCCAAGTAGTTTACCGGACAAATTGATAAGTCTGGCATTCCCAGCCCACCAA
GCAAAGCCGGTGGTTTCTTGGTCACGACCAGCTAAAACGAAAGTTCCATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCA
TGAGGCTGATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGGA
TTTCCTGGGAAACAAAGTAATAGGCACGTAAGTTCAGAGCCAAGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAATAGCATAAA
GAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGG
TTAAAAGCACGGAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCTACGGTCGCTCCATGAATAGCGCATAGCAGAGCCGCACCTAATACTC
CGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGAAAGAAAAGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCGC
AAAGAACCAACCAGATTGCCCCAGTGGATAAATAAGGAATACAGAAACAAAAACAGCAATTGGACCAGAGAATGAGATTGCATTATAAGGCCGCAATTGA
ACAAACCGAGCAAGTTCAAATTGGCGTAACATGAAACCTATTAGTGCAAAAGCCCCGTGGAGAGCTACAAAAGTCCATAGACCGCCTAATTGACACCAAC
GAGTAAAATCTCCTTGTGCTTCGGGCCCCCATAGTAGCAAAAAAGAGTGTGCTAAACTATTGGCAGGGGTAGAAACTGCTGCAGTTAAGAAATTACAACC
TTCCAAATAGGAACTAGCCAATCCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGC
AATAGGCCAGACCATCCTACAAAAACGAAACGGTCCCTTCGTAACCAGTCATCCATAGTATCAAATAGATCATTTTCTTCTTTAGGAATTCTACCAAGGG
CCATAGTCATAGTGATCCTCCTATTCAATTACTTCAACCATTTCCGAGCACCTCATATCACTTTCCAAGGCATATGATAGTTTTATCATCTGTGGACGAT
TTCTTTCTCGTTCAATGCCCTTTTTCAATGGTCTCGAAGAGAGAAATTTCCCATTTTTATCTATGGAGTCACAACCGAGGTCGTGGTAAATCCATGAATT
TGATTCGATTTGTTTTTCTTATACTATTTGTTTTTCTTATACTATAGAAATAGAAATAATTTTTCTTTCTTTCTTATACTATAGAAAGAAATAAACCTTT
GAATTCAGCATTATTCCAAGACTCCTATTTCAAAGTCTATCTTTTAAGGGAAAAATGAAAATAAAAGTAACCCTTCTTTTCCCATTCCCTCTCTATTGCA
TGGGTGGAAGAACTAAAATAGAGGATTCTGAAAAAAAAGGACCTTCGAAATCCAATTTTATGTGTAGCGCAAAGGAGTTGCGATTTCTTCTTATTCCTAT
AGAACATCTAGTAACAAGAATATGAAATCGTAAATAGCGAAAAATTCTTGTCTTGCGCGGTCTAAGTCTAAGGAAATAAAAAAAATTCGCTTATACAATT
TCATCTACATCGAATTTATATATCAGAATAGCGGATAGAGGCATCATTAAAGGAGTCAGGTCTACTTACTTTATGCTTCTTTCCAATTTTATGGTGGATT
TGATAAGAACCCTTTTTGCTTTCTTGATAAATAATCGACAAAAAAAGCGTTTTTTTATATAACCTGCTTGTTTTATTATAATTATAACAAGTCCTATATG
GAAATGCCCGCTAAAGAGAAAATCTATTTGATTGTCTCTCGACCAATA