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Detailed information on CNT30116821


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3B1|PSBD_SACHY, E-value = 7e-82

BLAST vs NONCODE:
NONORUT004582, E-value = 3e-130

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30257720Oryza nivaraAvena sativa28.655095.37367forward
CNT30664842Oryza nivaraTriticum dicoccoides28.8854.4194.32370forward
CNT3077544Oryza nivaraBrassica juncea23.8119.1189.84305forward
CNT30607747Oryza nivaraGossypium raimondii12.4940.186.25160forward
CNT30351849Oryza nivaraEragrostis tef8.5127.3995.41109reverse complement
CNT30481239Oryza nivaraChara braunii15.6937.2283.08201forward
CNT30426340Oryza nivaraPapaver somniferum28.8146.4291.33369forward
CNT30148543Oryza nivaraBrachypodium distachyon28.8819.996.22370forward
CNT30100296Oryza nivaraOryza rufipogon16.5547.3299.53212forward

Expression of CNT30116821

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVSKIEILHFYLWGHSRGRGKSMNLIQLVFLIL*

>peptide 2 (35 aa)
LLGPETLEKSFPFFGYVWKDRNKMPPKPKTAEEIR*

>peptide 3 (44 aa)
MVIVILLFNYFNHFRAPYITSKAYDRLSVDDFFSFNAFFQWSRR*

>peptide 4 (60 aa)
RFWDRRLLKNLFHSLVMCGKIEIKCHRSLRLRRKLDKVLQIQSTEKYLELLPRALLPNLE*

Sequence

>CNT30116821
CGCTTCTGGGACCGGAGACTCTTGAAAAATCTTTTCCATTCTTTGGTTATGTGTGGAAAGATAGAAATAAAATGCCACCGAAGCCTAAGACTGCGGAGGA
AATTAGATAAAGTACTCCAGATACAAAGTACGGAAAAGTATCTAGAACTTCTCCCCCGGGCCCTACTCCCCAACCTAGAGTAGCTAAGTGCGGAAGTAAA
ATCAACCCTTGTTCATACATGGGTTTTTCTGGTACGAAATGGGCCACTTCAAATAGGTTCATTGCTCCGGCCCAGAATACGATTAATCCTGCATGGGCTA
CGTGAGCTCCAAGTAGTTTACCCGACAAATTGATAAGTCTGGCATTCCCGGCCCACCAAGCAAAACCGTCTCAAATTCAGGATCTTCCGCTGCACGGATT
TCCTGGGAAACGAAGTCATAGGCACGTAGGTTCAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGTACAAATAGCATAAAGA
AATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAAAAGCGATTAGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTT
AAAAGCGCGGAAGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCGGATTGCCCCAGTGGATAAATCAGGAATACGGAAAC
AAAAACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCAATTGAACAGACCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCA
AAAGCCCCATGGAGAGCAACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGGCCCCATAGTAGCAACAAAGAGT
GTGCTAAACTATTGGCAGGGGTGGAAACTGCTGCGGTTAAGAAATTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGTCATAGTGATCCTCCTATTC
AATTACTTCAACCATTTCCGAGCACCTTATATCACTTCCAAGGCATACGATAGATTATCTGTGGACGATTTTTTCTCGTTCAATGCCTTTTTTCAATGGT
CTCGAAGATAGAAATTTTGCATTTTTATCTATGGGGTCACAGCCGAGGTCGTGGTAAATCCATGAATTTGATTCAATTAGTTTTTCTTATACTATAGAAA
TAAACATTGGAATTCAGGATTATTCCATGATTCCTATTTCCAAGAAAGCCTATTTTTTAAGGGAAAAATGAAAAAAAGTAA