Detailed information on CNT30257720


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3B1|PSBD_SACHY, E-value = 6e-171

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30284073Avena sativaTriticum aestivum10023.3297.82734forward
CNT30555990Avena sativaOryza glaberrima10046.7895.64734forward
CNT30664842Avena sativaTriticum dicoccoides90.7497.9496.85666forward
CNT3077544Avena sativaBrassica juncea41.2818.9891.75303forward
CNT30208139Avena sativaHelianthus annuus11.4424.7889.2984forward
CNT30351849Avena sativaEragrostis tef14.8527.39100109reverse complement
CNT30426340Avena sativaPapaver somniferum98.3790.8291722forward
CNT30148543Avena sativaBrachypodium distachyon73.1628.8996.83537forward
CNT30100296Avena sativaOryza rufipogon43.7371.6595.64321forward
CNT30116821Avena sativaOryza nivara5028.6595.37367forward

Expression of CNT30257720

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MKWVQRPIMKSLEEKDESKYRCYPKTRRKEPTRLPQWINKEYRNKNSDWTRE*

Sequence

>CNT30257720
CTGCACGGATTTCCTGGGAAACAAAGTCATAGGCACGTAAGTTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAA
TAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAAAAGCGGTTAGCAGTAACCATTGAATAAGTTTCTTCAGCT
TGAGTTGGGTTAAAAGCGCGGAAGGTATTTGCACCATCACCGTCCTCAAATAAAGTGTTTTCTACAGTCGCTCTATGAATAGCGCATAGCAGAGCCGCAC
CTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATCGCTGCTACCCCAAA
ACTCGGCGCAAAGAACCAACCAGATTGCCCCAGTGGATAAATAAGGAATACAGAAACAAAAACAGCGATTGGACCAGAGAATGAGATTGCATTATAAGGC
CGCAATTGAACAGACCGAGCAAGTTCAAATTGGCGTAACATGAAACCTATTAGTGCAAAAGCCCCGTGGAGAGCTACAAAAGTCCATAGACCGCCTAATT
GACACCAACGAGTAAAATCTCCTTGTGCTTCCGGACCCCATAGTAACAACAAAGAGTGTGCTAAACTATTGGCAGGGGTAGAAACTGCTGCGGTTAAGAA
ATTACAACCTTCCAAATAGGAACTAGCCAATCCA