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Detailed information on CNT30664842


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3B1|PSBD_SACHY, E-value = 2e-137

BLAST vs NONCODE:
NONVVIT001484, E-value = 1e-152

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201936Triticum dicoccoidesPisum sativum27.0620.8190.76184forward
CNT30284073Triticum dicoccoidesTriticum aestivum10021.697.79680forward
CNT30236148Triticum dicoccoidesBrassica oleracea52.6523.3189.94358forward
CNT30555990Triticum dicoccoidesOryza glaberrima10043.3495680forward
CNT30257720Triticum dicoccoidesAvena sativa97.9490.7496.85666forward
CNT3077544Triticum dicoccoidesBrassica juncea45.8819.5589.74312forward
CNT30208139Triticum dicoccoidesHelianthus annuus13.9728.0289.4795forward
CNT30351849Triticum dicoccoidesEragrostis tef16.1827.6494.55110reverse complement
CNT30481239Triticum dicoccoidesChara braunii28.0935.3783.25191forward
CNT30426340Triticum dicoccoidesPapaver somniferum99.5685.1690.55677forward
CNT3054279Triticum dicoccoidesAmborella trichopoda21.4721.687.67146forward
CNT30148543Triticum dicoccoidesBrachypodium distachyon81.0329.6496.19551forward
CNT30100296Triticum dicoccoidesOryza rufipogon39.1259.3895.49266forward
CNT30116821Triticum dicoccoidesOryza nivara54.4128.8894.32370forward
CNT30175943Triticum dicoccoidesVigna angularis45.2912.6189.94308forward

Expression of CNT30664842

Peptides detected in this lncRNA

>peptide 1 (37 aa)
LIHKPVISTNSIKKCNQRLLEKSNTKDLGPKAVSSDH*

>peptide 2 (52 aa)
MKWVQRPIMKSLEEKDESKYRCYAKTRRKEPTRLPQWINKEYRNKNSNWTRE*

Sequence

>CNT30664842
CACTCATCCATAAACCGGTGATAAGTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAAGCAACACCAAAGATTTGGGACCGAAAGCGGT
TAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGGAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCTACGGT
CGCTCCATGAATAGCGCATAGCAGAGCCGCACCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAA
AGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCAGATTGCCCCAATGGATAAATAAGGAATACAGAAACAAAAACAGCAA
TTGGACCAGAGAATGAGATTTCATTATAAGGCCGCAATTGAACAGACCGAGCAAGTTCAAATTGGCATAACATGAAACCTATTAGTGCAAAATCCCCATG
GAGAGCTACAAAAGTCCATAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCGGGCCCCCATAGTAGCAACAAAGAGTGTGCTAAACTA
TTGGCAGGGGTAGAAACTGATGCGGTTAAGAAATTACAACCTTCCAAATAGGAACTAGCCAATCCATGGGTATACCAAGA