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Detailed information on CNT30553963


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Oryza glaberrimaOryza sativa8.6830.590.1661forward
CNT30673906Oryza glaberrimaSetaria viridis30.4433.9193.93214forward
CNT30521388Oryza glaberrimaSetaria italica30.4433.8693.93214forward
CNT30396950Oryza glaberrimaTriticum turgidum8.2524.7991.3858forward
CNT30589276Oryza glaberrimaMusa acuminata20.9151.487.76147forward
CNT30442853Oryza glaberrimaAegilops tauschii37.4140.5992.78263forward
CNT30254829Oryza glaberrimaAvena sativa26.626.3891.98187forward
CNT30142178Oryza glaberrimaLolium perenne37.4140.6594.3263forward
CNT30680513Oryza glaberrimaTriticum urartu8.8224.0390.3262forward
CNT30596416Oryza glaberrimaOryza meridionalis48.5175.1195.01341forward
CNT30370544Oryza glaberrimaOryza glumipatula65.5854.4998.92461forward
CNT30101968Oryza glaberrimaOryza rufipogon78.8172.8998.92554forward
CNT30576681Oryza glaberrimaOryza barthii58.7571.0899.76413forward

Expression of CNT30553963

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MAKWVIRTRCWQRGRGRRTCRRTGRRGRRGRRRRGGRPSRSRCWCSRRWRRRGRRSAPGSWSRRRRGRRRG*

Sequence

>CNT30553963
TTTCTGATTTCCTATTTGCGAGGAGAAGACACAAGCTTATTTTGGAGGCTACAAACAAACTGAAATGACATGGCCCGAATCAAATGAAATCTCACAATGA
AACTCAACAGAAGTGTTCGATCTTAAACATGCATCTCATCCAACTTGCTCCACACTGATCACATTACAAATTAATCAAGAAGAAACTAAACATGGATCGA
TCATCACCCAAGTGTCACATCCTCGCAACAAAAGCCTTCTTCCCCATCTGAACCAAATCAATCCTTCACAACACATCCTCACAAGATTCTGACGATGGAG
TGACCATTTTTATGCGTGTTGCCGATGGCGAAATGGGTAATTAGAACTCGCTGCTGGCAACGGGGGCGTGGTCGCCGCACATGTAGACGTACCGGTAGAC
GAGGCCGGCGAGGCCGCCGCCGACGAGGGGGCCGACCCAGTAGATCCAGATGTTGGTGTAGTCGCCGCTGGCGACGGCGGGGCCGAAGGAGCGCGCCGGG
TTCATGGAGCCGCCGGAGAAGGGGCCGGCGACGAGGATGACGGCGCCGACGATGGCGCCGAGGAGCTGGGCGACCCAGTAGAAGACGCCGGTGAGGATGG
TGATCTGGCCGCCGAGGGCGAGGCCGAAGGCGATGTTGCCCGACATGGCGACGACGGTGGCGCGCGCGGGGGAGAGCTGAGTGAGCAGAGGAAGAGGAAG
GAG