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Detailed information on CNT30673906


BLAST search results

BLAST vs Swiss-Prot:
sp|O22588|TIP32_ARATH, E-value = 5e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521445Setaria viridisSetaria italica65.2945.2399.76412forward
CNT30376051Setaria viridisArabidopsis thaliana21.8716.9580.43138forward
CNT30618329Setaria viridisSesamum indicum23.1411.8482.19146forward
CNT30727261Setaria viridisCorchorus capsularis19.3321.981.15122forward
CNT30223457Setaria viridisHordeum vulgare22.9848.6691.72145forward
CNT30397893Setaria viridisTriticum turgidum31.0630.7795.92196forward
CNT30589165Setaria viridisMusa acuminata33.1245.6389.95209forward
CNT30553963Setaria viridisOryza glaberrima33.9130.4493.93214forward
CNT30443527Setaria viridisAegilops tauschii48.1855.4792.43304forward
CNT30254829Setaria viridisAvena sativa43.5838.7994.91275forward
CNT30142178Setaria viridisLolium perenne34.2333.3891.67216forward
CNT30229576Setaria viridisAnanas comosus26.3123.3185.54166forward
CNT3066802Setaria viridisLeersia perrieri22.6660.3490.21143forward
CNT30627409Setaria viridisDaucus carota25.9926.1181.1164forward
CNT30364799Setaria viridisSorghum bicolor25.5221.1691.93161forward
CNT30596416Setaria viridisOryza meridionalis17.5924.4593.69111forward
CNT30369235Setaria viridisOryza glumipatula26.7814.9888.76169forward
CNT30644098Setaria viridisCannabis sativa21.2447.8683.58134forward
CNT3022241Setaria viridisPopulus trichocarpa21.2413.7782.84134forward
CNT30101968Setaria viridisOryza rufipogon47.8639.7494.37302forward
CNT30576737Setaria viridisOryza barthii19.9728.9795.24126forward
CNT3063260Setaria viridisSelaginella moellendorffii16.828.2782.08106forward

Expression of CNT30673906

Peptides detected in this lncRNA

>peptide 1 (75 aa)
CCNGCCSSQPESHFMLPTLRLRETKQQCTATVTRRALRSRCWRRGRGRRTCRCTGRRCRRGLRRQAGRPSRSRCW*

>peptide 2 (59 aa)
MLVKSPLATAGPKERAGFMDPPEKGPATRMLAPTMKPMAMGAMVPREPFLGSAAVAYTV*

>peptide 3 (43 aa)
MLPDMVAVAGKGEELTDQGDRSYDGSHWLRIQIEDGASVPPFL*

Sequence

>CNT30673906
ATGCTGCAATGGATGCTGCTCATCACAGCCTGAATCTCACTTTATGCTGCCAACACTACGATTGAGAGAAACCAAACAACAATGCACGGCGACGGTCACT
CGGCGCGCGCTTAGAAGTCGCTGCTGGCGACGGGGGCGTGGTCGCCGCACATGTAGATGTACCGGTAGACGATGCCGGCGAGGCCTCCGCCGACAAGCGG
GCCGACCCAGTAGATCCAGATGTTGGTGAAGTCGCCGCTGGCCACGGCGGGGCCGAAGGAGCGGGCCGGGTTCATGGACCCGCCGGAGAAGGGGCCGGCG
ACGAGGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGCGCGATGGTGCCGAGGGAGCCCTTCTTGGGGTCGGCCGCGGTGGCGTACACGGTGTAGA
CGAGGCCGAAGGCGATGTTGCCCGACATGGTGGCGGTGGCAGGGAAGGGCGAGGAGCTGACTGACCAAGGGGATAGGAGCTACGATGGTAGCCACTGGCT
GAGAATACAGATCGAGGACGGGGCGAGTGTGCCACCGTTCTTATAGGGGAGCTGCCTGCCTCACTTAACACTCTTCAGATGCAAAACAATTAAAAAAAAA
ACTATTTGAGGTTATAATGGACCGGGTTGGT