Detailed information on CNT30364446


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATL6|TIP41_MAIZE, E-value = 3e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671329Sorghum bicolorSetaria viridis24.1914.698.3360forward
CNT30519799Sorghum bicolorSetaria italica37.115.3197.8392forward
CNT30442853Sorghum bicolorAegilops tauschii39.1114.9788.6697forward
CNT30142178Sorghum bicolorLolium perenne39.1114.9986.697forward

Expression of CNT30364446

Peptides detected in this lncRNA

>peptide 1 (48 aa)
QRTICMDEISSTHITYKPFNVAKSKANDDADPNAAFNSNPNSPDGRST*

>peptide 2 (61 aa)
KGPYAWTRYHRHTLHTNHLTWRRAKQTTTQIQTLRSIQIQTAQTAGALRPARPPPMSGPTQ*

Sequence

>CNT30364446
CAAAGGACCATATGCATGGACGAGATATCATCGACACACATTACATACAAACCATTTAACGTGGCGAAGAGCAAAGCAAACGACGACGCAGATCCAAACG
CTGCGTTCAATTCAAATCCAAACAGCCCAGACGGCCGGAGCACTTAGGCCAGCGAGGCCACCGCCGATGAGCGGGCCGACCCAGTAGACCCAGTTGCCGG
CGAAGTTGCCCGCGGCGACGGCGGGGCCGAAGGAGCGTGCGGGGTTCA