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Detailed information on CNT30396950


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XA61|TIP21_ORYSJ, E-value = 6e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Triticum turgidumOryza sativa83.769885.71196forward
CNT30225308Triticum turgidumHordeum vulgare82.4867.4896.37193forward
CNT30568703Triticum turgidumActinidia chinensis24.363.4487.7257forward
CNT30553963Triticum turgidumOryza glaberrima24.798.2591.3858forward
CNT30142178Triticum turgidumLolium perenne24.798.9693.158forward
CNT30680513Triticum turgidumTriticum urartu80.7773.2687.3189forward
CNT30595700Triticum turgidumOryza meridionalis83.3391.1285.64195forward
CNT30370544Triticum turgidumOryza glumipatula24.796.8691.3858forward
CNT3022241Triticum turgidumPopulus trichocarpa23.935.7687.556forward
CNT30116026Triticum turgidumOryza nivara83.7637.2685.71196forward

Expression of CNT30396950

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVMWPPEMLAAIATPTKRAKAWAIAIATRPTGSRAPSSVIFPARCKL

>peptide 2 (77 aa)
TDLSVGDEFEEEAGGGRAEQLGHPVEDPGEDGDVAAGDVGGDRDTDEEGEGVGDRDRHKANWVESAIIGDFPCTMQIG

Sequence

>CNT30396950
ACCGACCTTTCCGTGGGTGACGAATTTGAGGAGGAAGCAGGCGGCGGTAGAGCCGAGCAGCTGGGCCACCCAGTAGAAGATCCCGGTGAGGATGGTGATG
TGGCCGCCGGAGATGTTGGCGGCGATCGCGACACCGACGAAGAGGGCGAAGGCGTGGGCGATCGCGATCGCCACAAGGCCAACTGGGTCGAGAGCGCCAT
CATCGGTGATTTTCCCTGCACGATGCAAATTGGC