Detailed information on CNT30671443


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520455Setaria viridisSetaria italica4054.5196.55290forward
CNT30708754Setaria viridisGlycine max18.4822.5682.84134forward
CNT30288773Setaria viridisTriticum aestivum19.5954.295.77142forward
CNT30555842Setaria viridisOryza glaberrima16.1433.7294.87117forward
CNT30437396Setaria viridisAegilops tauschii14.4827.795.24105forward
CNT30657523Setaria viridisTriticum dicoccoides25.2421.6894.54183forward
CNT3013862Setaria viridisZea mays2020.7796.55145forward
CNT30651400Setaria viridisRosa chinensis18.928.2581.02137forward
CNT30126375Setaria viridisCorymbia citriodora26.4858.7281.25192forward
CNT30680526Setaria viridisTriticum urartu25.2433.0994.54183forward
CNT30477381Setaria viridisArabidopsis halleri18.0744.1183.21131forward
CNT30619887Setaria viridisCajanus cajan11.7232.8287.0685forward
CNT30496219Setaria viridisDigitaria exilis2064.1696.55145forward
CNT30556737Setaria viridisPanicum hallii14.7623.21100107forward

Expression of CNT30671443

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRGIARSTQIANSNSSFGGGRRGCRWGRCRCTRPETRRP*

>peptide 2 (42 aa)
LHWLQHSTNTRSRGMHRSTQAIESSQSIPSHKKEKVASTINL*

>peptide 3 (72 aa)
MGPEREVVPDVGAGELVAGEDGVSVDAPGLDDVGPAAALGPADEDELDDEEGGGVGGGGDECHGSESLWRGS*

>peptide 4 (91 aa)
MSLWEYNNVFLRVHAWGRSERWYPTSVPVSLLLGKMGSVLTLPGLMMSAQRRPSAQPMRMSSMMKRVVVSEEAETSAMAARACGAGASCVAW

>peptide 5 (58 aa)
MTASMARRPFLISLVRSSLIFSGEPLPQPSGSNHRPPGYLNFYMHFQHTEISHGYEDC*

>peptide 6 (59 aa)
YIGYNIVQIHDQEACIAPHKPLNHHSLFRPTKRKKSHRPSTYNNLHLMHAWYSTQHSDR*

Sequence

>CNT30671443
TTTACATTGGTTACAACATAGTACAAATACACGATCAAGAGGCATGCATCGCTCCACACAAGCCATTGAATCATCACAGTCTATTCCGTCCCACAAAAAG
GAAAAAGTCGCATCGACCATCAACCTATAACAATCTCCACCTCATGCATGCGTGGTATAGCACGCAGCACTCAGATCGCTAACTCCAACTCCTCATTTGG
GGGTGGGCGAAGAGGTTGTCGATGGGGCCGGTGCCGGTGTACTCGGCCTGAAACCAGGCGCCCATGACGGCGAGCATGGCGAGGCGGCCGTTCTTGATCT
CCTTGGTGCGCAGCTCCTTGATCTTCTCCGGCGAGCCGCTGCCCCAGCCGAGCGGGTCAAACCACAGGCCACCAGGGTACCTTAATTTTTACATGCATTT
CCAGCACACAGAGATCAGCCATGGATATGAGGACTGCTAGCAGCTAGATGAGTCTTTGGGAATATAATAATGTTTTCTTGCGTGTTCATGCATGGGGCCG
GAGCGAGAGGTGGTACCCGACGTCGGTGCCGGTGAGCTTGTTGCTGGGGAAGATGGGGTCAGTGTTGACGCTCCCGGGCTTGATGATGTCGGCCCAGCGG
CGGCCCTCGGCCCAGCCGATGAGGATGAGCTCGATGATGAAGAGGGTGGTGGTGTCGGAGGAGGCGGAGACGAGTGCCATGGCAGCGAGAGCTTGTGGCG
CGGGAGCTAGCTGTGTGGCGTGGGT