« Back to Populus trichocarpa search


Detailed information on CNT3026410


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515285Populus trichocarpaJuglans regia33.2213.3493.07101forward
CNT3046253Populus trichocarpaPrunus dulcis29.9342.7290.1191reverse complement
CNT3095958Populus trichocarpaSolanum tuberosum23.3623.4388.7371forward
CNT30654007Populus trichocarpaRosa chinensis32.8932.3690100forward
CNT30714740Populus trichocarpaMalus domestica golden26.6426.392.5981forward
CNT30154412Populus trichocarpaPrunus persica29.9329.8491.2191forward
CNT30572468Populus trichocarpaVitis vinifera20.0711.0593.4461forward
CNT3058191Populus trichocarpaAmborella trichopoda2524.7692.1176forward

Expression of CNT3026410

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLMRSGSVRLLSGPPVPSQELSQGILVKTWVSQLLEWRA*

>peptide 2 (47 aa)
MWWDVDYAYEVGFSAAVIWPARSKPGVEPRHPSEDLGVSAPRVEGIA*

Sequence

>CNT3026410
GCTGAGCTTGGTAACGCGAGCTTGTAACCCGAGTGGGGGCTTTAATGTGGTGGGACGTTGACTATGCTTATGAGGTCGGGTTCAGTGCGGCTGTTATCTG
GCCCGCCCGTTCCAAGCCAGGAGTTGAGCCAAGGCATCCTAGTGAAGACCTGGGTGTCTCAGCTCCTAGAGTGGAGGGCATAGCGTGAGGCTGGTCTCAC
AGAGCAGCGATCACCTCCCGCTCCTGGCAGTGGAAGGATAACGGGTCGGTGCCATCTGGATCCGCATGGTCTGATGGGCTGGTCCTAATTGAACCATCAC
TTTT