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Detailed information on CNT3059713


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Arabidopsis lyrataCorylus avellana50.8144.0782.69156reverse complement
CNT30698009Arabidopsis lyrataQuercus lobata46.2545.6682.39142reverse complement
CNT3021011Arabidopsis lyrataCitrullus lanatus20.5211.3188.8963forward
CNT30403856Arabidopsis lyrataBeta vulgaris40.7240.5882.4125forward
CNT30526719Arabidopsis lyrataPhaseolus vulgaris38.7638.0283.19119forward
CNT3045914Arabidopsis lyrataPrunus dulcis57.3357.1482.95176forward
CNT3095958Arabidopsis lyrataSolanum tuberosum25.7326.0784.8179forward
CNT30297476Arabidopsis lyrataTriticum aestivum22.4822.6286.9669forward
CNT30587521Arabidopsis lyrataMusa acuminata27.0425.3889.1683forward
CNT30171622Arabidopsis lyrataTrifolium pratense36.1636.7584.68111forward
CNT30439638Arabidopsis lyrataAegilops tauschii22.4822.6286.9669forward
CNT30128358Arabidopsis lyrataCorymbia citriodora29.3232.6186.6790reverse complement
CNT30719063Arabidopsis lyrataMalus domestica golden50.8120.3981.41156forward
CNT30623435Arabidopsis lyrataDaucus carota18.2420.0789.2956reverse complement
CNT30153204Arabidopsis lyrataPrunus persica50.1650.1682.47154forward
CNT30704539Arabidopsis lyrataPrunus avium57.6516.5182.49177reverse complement
CNT30174902Arabidopsis lyrataVigna angularis49.1949.5181.46151forward
CNT3050507Arabidopsis lyrataCucumis sativus25.0825.2588.3177forward

Expression of CNT3059713

Peptides detected in this lncRNA

>peptide 1 (62 aa)
SSLVKQACDPSGDNKGDGTLSRSHWAGFGLAFYWPAHSKSGVETCVLSEGSGLLFLRAEETA*

Sequence

>CNT3059713
GTCGAGCTTAGTAAAGCAGGCTTGTGATCCAAGTGGAGACAACAAAGGTGATGGAACATTGAGTCGATCTCACTGGGCCGGGTTTGGTTTGGCTTTCTAC
TGGCCTGCCCATTCCAAGTCGGGAGTTGAGACCTGTGTCTTGAGCGAAGGCTCGGGGCTCTTGTTTCTTAGAGCGGAGGAGACCGCGTGAGGCTGGTTTC
ACAGAGCAGCGTCCACCTTCCTCTCTCGACGGTGGAAGGATAACGGGCCGGTGCCTTCCGTGCCCACTATGACCCATTAAGCCGACTCCATCTGGACCAT
CACTTTT