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Detailed information on CNT30210362


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315642Helianthus annuusCorylus avellana34.8522.284.11107forward
CNT30547454Helianthus annuusIpomoea triloba26.712585.3782forward
CNT30727290Helianthus annuusCorchorus capsularis52.1252.4685160forward
CNT30507382Helianthus annuusNicotiana attenuata30.2930.4982.893forward
CNT3044357Helianthus annuusPrunus dulcis48.2148.6883.78148forward
CNT3095958Helianthus annuusSolanum tuberosum22.823.187.1470forward
CNT30566737Helianthus annuusActinidia chinensis30.6237.7588.394reverse complement
CNT30541074Helianthus annuusBrassica napus23.7823.8686.373forward
CNT30235645Helianthus annuusBrassica oleracea22.4822.4886.9669forward
CNT30510959Helianthus annuusSolanum lycopersicum22.822.9587.1470forward
CNT30261535Helianthus annuusBrassica rapa24.762586.8476forward
CNT30648233Helianthus annuusRosa chinensis37.4637.4685.22115forward
CNT30714783Helianthus annuusMalus domestica golden48.5349.0185.91149forward
CNT30356369Helianthus annuusLactuca sativa100.3316.3785.71308forward
CNT30724440Helianthus annuusLupinus angustifolius23.4523.7687.572forward

Expression of CNT30210362

Peptides detected in this lncRNA

>peptide 1 (89 aa)
PGLVTRACDSSEGMKVGWTVIEPSMVGSSCCNIWPARSKFGVVSCGSGEGLGHVAPRAEGNALGWFHRAAKTSRSEQWKDNGSVHRWPI*

Sequence

>CNT30210362
GCCGGGCTTGGTAACGCGAGCTTGTGACTCAAGTGAGGGCATGAAAGTGGGCTGGACTGTGATTGAGCCCAGTATGGTTGGGTCAAGTTGTTGCAATATC
TGGCCTGCCCGTTCCAAGTTTGGAGTTGTGTCATGTGGTTCAGGCGAAGGCCTGGGCCATGTGGCTCCTAGAGCTGAGGGCAATGCGTTAGGCTGGTTTC
ACAGAGCTGCGAAAACTTCACGCTCTGAACAGTGGAAGGATAACGGGTCGGTGCATCGTTGGCCCATATAACCATCTGGGTTCATTCAAATGAACTCCCA
CTTTTTT