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Detailed information on CNT30714740


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Malus domestica goldenCorylus avellana5043.584.42154reverse complement
CNT30698009Malus domestica goldenQuercus lobata45.7845.3484.4141reverse complement
CNT30403379Malus domestica goldenBeta vulgaris20.4520.4592.0663forward
CNT30525537Malus domestica goldenPhaseolus vulgaris20.7820.9889.0664forward
CNT30506943Malus domestica goldenNicotiana attenuata22.422.6291.369forward
CNT3045914Malus domestica goldenPrunus dulcis81.4981.4987.25251forward
CNT30634223Malus domestica goldenCapsicum annuum23.0524.3287.3271reverse complement
CNT3095958Malus domestica goldenSolanum tuberosum24.0324.4290.5474forward
CNT30509597Malus domestica goldenSolanum lycopersicum19.8121.1191.861reverse complement
CNT30597892Malus domestica goldenFraxinus excelsior23.3823.6186.1172reverse complement
CNT30654007Malus domestica goldenRosa chinensis91.5691.2684.04282forward
CNT30155059Malus domestica goldenPrunus persica81.4981.7685.66251forward
CNT3058749Malus domestica goldenAmborella trichopoda18.8321.2596.5558forward
CNT3026410Malus domestica goldenPopulus trichocarpa26.326.6492.5981forward
CNT30121042Malus domestica goldenCitrus clementina24.0324.5891.8974reverse complement

Expression of CNT30714740

Peptides detected in this lncRNA

>peptide 1 (39 aa)
SSLVTQACNPSGGIEVLEHWFSVGCSGLEWLYSGLPIPS*

>peptide 2 (38 aa)
MEPRKAGFTEQRLPPALGSGRITGRCHPDPSWIAGLPH*

Sequence

>CNT30714740
GTCGAGCTTGGTAACGCAAGCTTGTAACCCAAGTGGGGGCATTGAGGTGTTGGAACATTGGTTCAGCGTTGGCTGTTCGGGTCTGGAGTGGCTCTATTCC
GGCCTGCCCATTCCAAGCTAGGAGTTGAGTTGTGTGGCTTGAGCGAAGGCTCTAGGCTACACGATTTCTAGAGCGGATGGAACCGCGTAAGGCTGGTTTC
ACAGAGCAACGATTACCTCCCGCTCTTGGCAGTGGAAGGATAACGGGTCGGTGCCATCCGGATCCATCATGGATAGCTGGGCTGCCCCATTGAACCAACG
CTTTTTTT