Detailed information on CNT30121042


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Citrus clementinaCorylus avellana22.5919.2194.1268forward
CNT30700605Citrus clementinaQuercus lobata35.2221.1285.85106forward
CNT30373911Citrus clementinaArabidopsis thaliana21.9322.0790.9166forward
CNT30272829Citrus clementinaChenopodium quinoa26.5826.0693.7580reverse complement
CNT30632032Citrus clementinaVigna unguiculata20.610.3388.7162forward
CNT3044932Citrus clementinaPrunus dulcis36.8836.1688.29111reverse complement
CNT3095958Citrus clementinaSolanum tuberosum28.2428.0585.8885reverse complement
CNT30587521Citrus clementinaMusa acuminata27.2425.0887.882reverse complement
CNT3084328Citrus clementinaVigna radiata23.5923.3692.9671reverse complement
CNT30235726Citrus clementinaBrassica oleracea20.9320.5990.4863reverse complement
CNT30172221Citrus clementinaTrifolium pratense23.5926.7990.1471reverse complement
CNT30145967Citrus clementinaMedicago truncatula22.9223.4788.4169reverse complement
CNT30612154Citrus clementinaArabis alpina24.5824.3489.1974forward
CNT30714740Citrus clementinaMalus domestica golden24.5824.0391.8974reverse complement
CNT30155101Citrus clementinaPrunus persica25.9114.0391.0378reverse complement
CNT30408305Citrus clementinaPapaver somniferum22.2623.1889.5567forward
CNT30704539Citrus clementinaPrunus avium26.917.5691.3681forward
CNT3030049Citrus clementinaTheobroma cacao24.2523.7891.7873reverse complement
CNT3058749Citrus clementinaAmborella trichopoda19.2721.2593.158reverse complement
CNT30724440Citrus clementinaLupinus angustifolius20.9320.7988.8963reverse complement
CNT3050536Citrus clementinaCucumis sativus22.5922.389.7168reverse complement

Expression of CNT30121042

Peptides detected in this lncRNA

>peptide 1 (97 aa)
KSVCSIEGDYPSTSEPTGNRPVIHPLTRAGGRRCSVKPASRGSLHFSIQVIQAFARTTWITHYLDWAGRYRTHQAQLGWSSQRPNTLMPHLVTGSRY*

Sequence

>CNT30121042
AAAAGTGTTTGTTCTATTGAGGGAGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGACCCGTTATCCATCCACTGACAAGAGCGGGAGGTCGTCGCT
GCTCTGTGAAACCAGCCTCACGCGGTTCCCTCCACTTTAGCATCCAAGTGATCCAGGCCTTCGCCCGGACCACGTGGATCACTCATTACTTGGATTGGGC
GGGCCGGTATCGCACCCACCAGGCCCAACTTGGATGGTCCAGCCAACGTCCAAACACCTTAATGCCCCACTTGGTTACAGGCTCGCGTTACTGAGCCCGG
T