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Detailed information on CNT30718002


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 2e-38

BLAST vs NONCODE:
NONVVIT001489, E-value = 7e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373235Malus domestica goldenArabidopsis thaliana37.5415.0784.96113forward
CNT3042661Malus domestica goldenPrunus dulcis43.5244.4190.84131forward
CNT3098506Malus domestica goldenSolanum tuberosum20.62.9890.3262forward
CNT30567368Malus domestica goldenActinidia chinensis36.5419.2387.27110forward
CNT30586158Malus domestica goldenMusa acuminata76.4155.4279.57230forward
CNT30236731Malus domestica goldenBrassica oleracea59.4744.9779.89179forward
CNT3080090Malus domestica goldenBrassica juncea37.5427.9783.19113forward
CNT30462305Malus domestica goldenSaccharum spontaneum44.5232.6885.07134forward
CNT3017024Malus domestica goldenZea mays43.5265.1783.21131forward
CNT30653821Malus domestica goldenRosa chinensis58.845.9787.57177forward
CNT30366246Malus domestica goldenSorghum bicolor33.8922.1383.33102forward
CNT30357259Malus domestica goldenLactuca sativa33.8910.3782.35102forward
CNT30704355Malus domestica goldenPrunus avium70.4317.7691.51212forward
CNT3033018Malus domestica goldenTheobroma cacao51.8317.9380.77156forward
CNT3025942Malus domestica goldenPopulus trichocarpa28.926.2885.0687forward
CNT30319475Malus domestica goldenAsparagus officinalis30.563.5985.8792forward
CNT30119217Malus domestica goldenCitrus clementina44.8514.9884.44135forward

Expression of CNT30718002

Peptides detected in this lncRNA

>peptide 1 (56 aa)
GIDIAHGIVTWAATVMVVTAGGSFEWTTSPSKAIVCILIDTAAGVALRAGVVVVTN*

Sequence

>CNT30718002
CCGGCATTGACATCGCACACGGGATAGTCACTTGGGCAGCAACTGTAATGGTCGTCACAGCAGGTGGCTCCTTCGAGTGGACAACATCCCCAAGCAAAGC
AATAGTTTGCATACTCATAGATACAGCAGCAGGTGTTGCTCTCAGGGCAGGAGTAGTGGTTGTCACAAACTGACGGGGGCTTTACCGGAGACGGAGGAGA
AGGGCCAGGGTTAGGGGGATTCTGGCCTTTCTTGATGGGGTAAGAAGGCTCCATGGCAATTCCACATATCCCATTGGCGGTGTTGCCCAGATTACGCTGC
A