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Detailed information on CNT30462305


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 5e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676299Saccharum spontaneumSetaria viridis36.8327.7188.74151forward
CNT30567368Saccharum spontaneumActinidia chinensis28.2920.2887.07116forward
CNT30586158Saccharum spontaneumMusa acuminata38.7838.3184.28159forward
CNT30236731Saccharum spontaneumBrassica oleracea21.7122.3683.1589forward
CNT304435Saccharum spontaneumZea mays53.1725.0693.12218forward
CNT3067329Saccharum spontaneumLeersia perrieri26.3442.5287.96108forward
CNT30718002Saccharum spontaneumMalus domestica golden32.6844.5285.07134forward
CNT30344730Saccharum spontaneumEragrostis tef56.5919.6887.93232forward
CNT30366246Saccharum spontaneumSorghum bicolor34.6330.899.3142forward
CNT30357259Saccharum spontaneumLactuca sativa20.248.4385.5483forward
CNT30370041Saccharum spontaneumOryza glumipatula42.9317.0587.5176forward
CNT3033044Saccharum spontaneumTheobroma cacao21.4611.5886.3688forward
CNT30119217Saccharum spontaneumCitrus clementina37.0716.8784.21152forward
CNT30575980Saccharum spontaneumOryza barthii42.9385.4486.93176forward
CNT30585367Saccharum spontaneumEchinochloa crusgalli55.1276.6188.5226forward
CNT30603971Saccharum spontaneumOryza punctata53.914.185.52221forward
CNT3063316Saccharum spontaneumSelaginella moellendorffii30.9855.782.68127forward

Expression of CNT30462305

Peptides detected in this lncRNA

>peptide 1 (88 aa)
RSLLYVADGVVMGAAAVVIVTAGGALERAAAPGEAVLAILVDAAAGGALRARVVVVTDAGSGQGSGGWRPPSGGTMVQRRYRTCRWTP*

>peptide 2 (96 aa)
TFPAVRCRWGSHGGSSCSDRHSRWRPRAGSSPRRSSTCHTRRCSSRWCSQGTSSSCHRRGVGPGFGGLAPSFRGYDGSTAIPHLPLDALMLRSILM*

Sequence

>CNT30462305
CACGTTCCCTGCTGTACGTTGCAGATGGGGTAGTCATGGGGGCAGCAGCTGTAGTGATCGTCACAGCAGGTGGCGCCCTCGAGCGGGCAGCAGCCCCAGG
CGAAGCAGTACTTGCCATACTCGTAGATGCAGCAGCAGGTGGTGCTCTCAGGGCACGAGTAGTAGTTGTCACAGACGCGGGGTCGGGCCAGGGTTCGGGG
GGTTGGCGCCCTCCTTCAGGGGGTACGATGGTTCAACGGCGATACCGCACTTGCCGCTGGACGCCTTGATGTTGCGCTCCATCCTGATGTAACCGGACTC
GCCCCAGCTGCTGCCCCATGAGTTCTTAACGATCCAGTAGTCCTTGCCATTCTCTGTGCCATAGCCGACGGCCGTGACACCATGGTCCAACGCTGTTCCA
CACTTTCCAG