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Detailed information on CNT3025942


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 1e-47

BLAST vs NONCODE:
NONATHT000573, E-value = 2e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548101Populus trichocarpaIpomoea triloba21.4523.0585.9271forward
CNT30372246Populus trichocarpaArabidopsis thaliana58.6116.9380.93194forward
CNT3042661Populus trichocarpaPrunus dulcis20.5423.0589.7168forward
CNT30563550Populus trichocarpaActinidia chinensis51.6618.2381.29171forward
CNT30236731Populus trichocarpaBrassica oleracea36.8630.6581.97122forward
CNT3080090Populus trichocarpaBrassica juncea36.8630.281.97122forward
CNT3017024Populus trichocarpaZea mays16.6227.3687.2755forward
CNT30653584Populus trichocarpaRosa chinensis2912.6684.3896forward
CNT30718002Populus trichocarpaMalus domestica golden26.2828.985.0687forward
CNT30704355Populus trichocarpaPrunus avium20.545.786.7668forward
CNT3033018Populus trichocarpaTheobroma cacao74.9228.5182.26248forward
CNT3035651Populus trichocarpaCucumis melo34.1410.2482.3113forward

Expression of CNT3025942

Peptides detected in this lncRNA

>peptide 1 (87 aa)
NQAGSFINVADWVLMWAAAIMVITAGKVIITHGRRFYWRWRRWTRIGGILAFLDRVRGFYCNSTFSCWTSNVSLHSDIAALSPALAP*

Sequence

>CNT3025942
AATCAAGCAGGTTCCTTCATTAACGTTGCAGACTGGGTACTCATGTGGGCAGCAGCTATAATGGTCATCACAGCAGGAAAAGTAATTATCACACACGGAA
GGAGGTTTTACTGGAGATGGAGGCGATGGACCAGGATTGGGGGGATTTTGGCCTTTCTTGATAGGGTAAGAGGGTTCTATTGCAATTCCACATTTTCCTG
TTGGACTAGCAATGTTTCTCTCCATTCTGATATAGCCGCTCTCTCCCCAGCTCTTGCCCCATGAGTTCCTCACAATCCAGTAATCTTTACCCTTTTCAGT
TCCGTAACCCACGGCAGCAACACCATGGTCC