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Detailed information on CNT3033018


BLAST search results

BLAST vs Swiss-Prot:
sp|P43297|RD21A_ARATH, E-value = 2e-45

BLAST vs NONCODE:
NONVVIT001489, E-value = 4e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30567369Theobroma cacaoActinidia chinensis12.6421.7486.36110forward
CNT30608642Theobroma cacaoGossypium raimondii21.9527.6883.25191forward
CNT30653821Theobroma cacaoRosa chinensis32.8774.2979.37286forward
CNT30718002Theobroma cacaoMalus domestica golden17.9351.8380.77156forward
CNT30354988Theobroma cacaoLactuca sativa7.8225.0986.7668forward
CNT3025942Theobroma cacaoPopulus trichocarpa28.5174.9282.26248forward

Expression of CNT3033018

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MKLKGGLQYDKTKENIERHRPVFHPPFNIIYCLKSQYS*

>peptide 2 (45 aa)
MSSSQSNNLYPSLCHIQQQSHHGPVVFHIFHQIYPKEIGRKVDIH*

Sequence

>CNT3033018
GGCTGCGTTCTGTCTGTTTCCCCAATGCAACATGGATAATTAGGACGCTATATACATAATTGGCATCTGAGTAACTTTTATAAACCATCCATCCTTGGGT
ATGAAATTGAAAGGAGGATTGCAGTACGATAAAACCAAGGAGAACATTGAGCGCCATCGACCTGTCTTTCATCCTCCCTTTAACATCATCTACTGCTTAA
AATCCCAGTACTCGTAGACACAGCAGCAGGTATTGCTTTCAGGGCAGGTGTAATAACTATCACAAACGGTAGGAGGCTTTATCGGAGATGGAGGAGAGGG
ACCAGGGTTGGGGGGATTTTGACCCTTTTTGATAGGATAAGAGGCTTCGATTGCAATTCCACATTTTCCTGTTACGCTATTGGCCTCATTTCGCGCCATC
CTAATATAGCCTTCCTCTCCCCAGCTGCTGCCCCATGAGTTCTTCACAATCCAATAATCTTTACCCTTCTCTGTGCCATATCCAACAGCAGTCACACCAT
GGTCCAGTTGTGTTCCACATTTTCCATCAAATATACCCTAAAGAAATTGGAAGAAAAGTAGACATACATTAACTCCGCATTTAAGAAGACGTAATTGTTT
CATGATAAGTATGAAATTTATTAAATCGTGCTCAGACTTGATAATCTAATCAGAATAATTAGCAACAAAGCATTCAGGTTCAGCCCGTGGGGATCTAGTT
TTTATGGGTGGAAAAAGAGGTGTTTCTTTCTATAGCAAAGGCGGTAACAAATAGTAACATCAACTCCACGAGATCGTTTCAGGTTGCATTAATTAATTAA
AATCATACGTGATCTCATGATCATCCTAAATCTAAATTATGGTCAGAATAGCAAGTAATGTTGATGATGC