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Detailed information on CNT30373235


BLAST search results

BLAST vs Swiss-Prot:
sp|P43297|RD21A_ARATH, E-value = 4e-91

BLAST vs NONCODE:
NONATHT000573, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3042661Arabidopsis thalianaPrunus dulcis9.0723.0588.2468forward
CNT30567368Arabidopsis thalianaActinidia chinensis16.822.0384.92126forward
CNT30236731Arabidopsis thalianaBrassica oleracea53.0710089.2398forward
CNT3080090Arabidopsis thalianaBrassica juncea53.4799.2691.77401forward
CNT30718002Arabidopsis thalianaMalus domestica golden15.0737.5484.96113forward

Expression of CNT30373235

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MEVKVQSRFHIFLMKTQCYAPSLGIHSLPSFYPMSFSQSSNLCRSQFRIQPPQLRGLVVFHNFHQIYPSDEKITSTH*

>peptide 2 (64 aa)
INRFLDQGHKPGTREGSNYSCHHSKWLLLVGNIPKQSNTCHTQTDNNKCCSQDKCSNCHIGLEA*

>peptide 3 (42 aa)
MGDGGEGSIAIPHFPDEDAMLRAILRYPLSPQLLPHEFLTIQ*

Sequence

>CNT30373235
CAATAAACAGGTTCCTTGATCAAGGTCACAAACCGGGTACTCGTGAGGGCAGCAACTATAGTTGTCATCACAGCAAGTGGCTGCTTCTAGTGGGCAACAT
CCCCAAGCAAAGCAATACTTGCCATACTCAAACAGACAACAACAAGTGTTGCTCTCAGGACAAGTGTAGTAACTGTCACATTGGGTTGGAGGCTTGATGG
GAGATGGAGGTGAAGGTTCAATCGCGATTCCACATTTTCCTGATGAAGACGCAATGTTACGCGCCATCCTTAGGTATCCACTCTCTCCCCAGCTTTTACC
CCATGAGTTTCTCACAATCCAGTAATCTTTGCCGTTCTCAGTTCCGTATCCAACCGCCACAACTCCGTGGTCTAGTTGTGTTCCACAACTTCCATCAAAT
ATACCCTTCAGATGAAAAGATCACATCAACACATTAGAGACAAAGGTGACTAACAACAATATGAACATTTTGAGACCAAAAATAGTGAAAAGCTACTTAA
TATTCAACCACCTATTAGATGCAATTGTTTCATGCGTTTATATATGAATAAAACTTTACATTTTCAAACACTAGCAACATTTTTTTCAATTTTTCATAGA
ATTCTTTTGTAAAGTGTAAACGCAAACACCAAACAGAGTTTCTCCTTTCGTTTGTAATTGGCGTATACAATTAACAACAGAAGTGAAATGGATTTATATG
CATAAAAACTAACAAACACCTAAGAACTATGAGAAGATGGTTAAATTTGT