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Detailed information on CNT3042661


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 2e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373235Prunus dulcisArabidopsis thaliana23.059.0788.2468forward
CNT3020326Prunus dulcisCitrullus lanatus22.3718.1386.3666forward
CNT30711290Prunus dulcisGlycine max20.684.6386.8961forward
CNT3098506Prunus dulcisSolanum tuberosum28.814.0984.7185forward
CNT30567368Prunus dulcisActinidia chinensis33.2217.1385.7198forward
CNT30586158Prunus dulcisMusa acuminata32.5423.1382.2996forward
CNT30236731Prunus dulcisBrassica oleracea21.6916.0887.564forward
CNT30143926Prunus dulcisMedicago truncatula2016.8691.5359forward
CNT3080090Prunus dulcisBrassica juncea21.6915.8485.9464forward
CNT3017024Prunus dulcisZea mays43.3963.6881.25128forward
CNT30653584Prunus dulcisRosa chinensis48.4718.8786.71143forward
CNT30718002Prunus dulcisMalus domestica golden44.4143.5290.84131forward
CNT30412746Prunus dulcisPapaver somniferum25.0810.9686.4974forward
CNT3033044Prunus dulcisTheobroma cacao42.0316.3280.65124forward
CNT3025942Prunus dulcisPopulus trichocarpa23.0520.5489.7168forward
CNT30319475Prunus dulcisAsparagus officinalis22.032.5386.1565forward
CNT30119217Prunus dulcisCitrus clementina49.4916.284.25146forward

Expression of CNT3042661

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MWRPQVDNIPKQSSSLHTHKYSSRLRSILM*

>peptide 2 (53 aa)
QLTGSCIDIADWVVTWAATIMVITACGALKWTTSPSKAVVCILINTAAGYAPS*

Sequence

>CNT3042661
CAGTTGACAGGTTCCTGCATTGACATTGCAGACTGGGTAGTCACTTGGGCAGCAACTATAATGGTCATCACAGCATGTGGCGCCCTCAAGTGGACAACAT
CCCCAAGCAAAGCAGTAGTTTGCATACTCATAAATACAGCAGCAGGTTACGCTCCATCCTGATGTAGCCTTCTTCTCCCCAGCTGCCACCCCATGAATTT
CTCACTATCCAGTAATCAACTCCTTTGTCTGTTCCATATCCCACAACTGTAACACCATGGTCCAATGATGTTCCACACCGTCCCGTAAATACACC