« Back to Citrus clementina search


Detailed information on CNT30119217


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 2e-79

BLAST vs NONCODE:
NONVVIT001489, E-value = 4e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548101Citrus clementinaIpomoea triloba7.4421.7588.0667forward
CNT3042661Citrus clementinaPrunus dulcis16.249.4984.25146forward
CNT30567368Citrus clementinaActinidia chinensis14.5422.987.02131forward
CNT30586158Citrus clementinaMusa acuminata14.8732.2984.33134forward
CNT30236731Citrus clementinaBrassica oleracea12.5428.3983.19113forward
CNT30143968Citrus clementinaMedicago truncatula9.2124.6385.5483forward
CNT3080090Citrus clementinaBrassica juncea14.8733.1782.84134forward
CNT30462305Citrus clementinaSaccharum spontaneum16.8737.0784.21152forward
CNT3017024Citrus clementinaZea mays16.5474.1381.88149forward
CNT3067329Citrus clementinaLeersia perrieri5.7720.4790.3852forward
CNT30653821Citrus clementinaRosa chinensis14.5434.0384.73131forward
CNT30718002Citrus clementinaMalus domestica golden14.9844.8584.44135forward
CNT30412746Citrus clementinaPapaver somniferum15.5420.7481.43140forward

Expression of CNT30119217

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MQSKSYHTQRHSSKCCSQGKSNNCHTQQEDFGLSLWDMRPPWQFHTCP*

>peptide 2 (58 aa)
MWAAAIVVITAGGSLKRAASPCKARVTILKDTAASVALRARVIIVTHSRRILAFLYGI*

>peptide 3 (62 aa)
MMPGIWWRTLEIDNNNLFVHCSDSTQIDNLQRYIQNQRPNKYLTDHPPAGTLTFEMKCSKMN*

Sequence

>CNT30119217
AAGAAGAATCGTTAAATATCAATTCATAAAAGCCTCCGCTGAATGATGCCAGGGATTTGGTGGAGGACATTGGAAATAGATAACAACAATTTGTTTGTGC
ATTGTTCGGATTCAACGCAGATAGATAACTTACAACGCTATATACAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAAC
GTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAATATTACAGATGGGATAGTCATGTGGGCAGCAGCTATAG
TGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTCAGGGC
AAGAGTAATAATTGTCACACACAGCAGGAGGATTTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGC
CACGTTACGCTCCATCCTAATATAGCCACCCTCTCCCCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCA
ACAGCAGTAACACCATGGTCCAGAGATGTCCCACATCTTCCCGTAAATATACCCTGAAAATTTGCAAAGACAGAAAAATATACTTGAGACTTCCTTAAAA
CAGATCAGACACACACAAGACTCTTCCTGATCCTGTTTAGAAACCATTAGAAATACAATAATTTTTGTTCAAATACCATCCAGTATTGTCTCAACCATAT
CTTTTCAGAACTGCAAAATGCAAATACTTTGTATCTAGATAATAGCAACATCCCTAAATCTAAAATGTGACAAGTGCCATGAAGAGATGAAAGTTACCGA
T