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Detailed information on CNT30236731


BLAST search results

BLAST vs Swiss-Prot:
sp|P43297|RD21A_ARATH, E-value = 3e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373235Brassica oleraceaArabidopsis thaliana10053.0789.2398forward
CNT3042661Brassica oleraceaPrunus dulcis16.0821.6987.564forward
CNT30567368Brassica oleraceaActinidia chinensis31.4121.8582.4125forward
CNT3080090Brassica oleraceaBrassica juncea99.598.0292.42396forward
CNT30462305Brassica oleraceaSaccharum spontaneum22.3621.7183.1589forward
CNT304435Brassica oleraceaZea mays25.3811.6182.18101forward
CNT30718002Brassica oleraceaMalus domestica golden44.9759.4779.89179forward
CNT30412746Brassica oleraceaPapaver somniferum31.4118.5282.4125forward
CNT30704355Brassica oleraceaPrunus avium28.399.4681.42113forward
CNT3025942Brassica oleraceaPopulus trichocarpa30.6536.8681.97122forward
CNT30119217Brassica oleraceaCitrus clementina28.3912.5483.19113forward

Expression of CNT30236731

Peptides detected in this lncRNA

>peptide 1 (58 aa)
QGHKRGTREGSNYSCHHNMWLLLVGNIPKQGNTCHNQTDNNKCCSQDMCSSCHIGSEA*

>peptide 2 (70 aa)
MEVKVQGLAPQRFHIFLLKTQCCAPSLYIRSLPNLFPMSFSQSNSLCHSLFRIRPPQLRGLDLFHKFHRIY

Sequence

>CNT30236731
CAAGGTCACAAACGGGGTACTCGTGAGGGCAGCAACTATAGTTGTCATCACAACATGTGGCTGCTTCTAGTGGGCAACATCCCCAAGCAAGGCAATACTT
GCCATAATCAAACAGACAACAACAAGTGTTGCTCTCAGGACATGTGTAGTAGCTGTCACATTGGGTCGGAGGCTTGACGGGAGATGGAGGTGAAGGTCCA
GGGTTTGGCTCCACAGCGATTCCACATTTTCCTGCTGAAGACGCAATGTTGCGCTCCATCCTTATATATCCGCTCTCTCCCCAACTTGTTCCCCATGAGT
TTTTCACAATCCAATAGTCTTTGCCATTCTCTGTTCCGTATCCGACCGCCACAACTCCGTGGTCTAGATCTGTTCCACAAATTCCATCGAATATACCC